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[MRG] NetworkPlot class to enable interactive visualizations and animations #649

Merged
merged 30 commits into from
May 23, 2024
Merged

[MRG] NetworkPlot class to enable interactive visualizations and animations #649

merged 30 commits into from
May 23, 2024

Commits on May 22, 2024

  1. Add cell position argument ot cell plots

    @ntolley
    ntolley committed May 22, 2024
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  2. Add position tests

    @ntolley
    ntolley committed May 22, 2024
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  3. WIP

    @ntolley
    ntolley committed May 22, 2024
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  4. start notebook

    @ntolley
    ntolley committed May 22, 2024
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  5. Start networkplot class

    @ntolley
    ntolley committed May 22, 2024
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  6. Functioning NetworkPlot class

    @ntolley
    ntolley committed May 22, 2024
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  7. Update demo code

    @ntolley
    ntolley committed May 22, 2024
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  8. Fix cell plot test

    @ntolley
    ntolley committed May 22, 2024
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  9. First pass at export function, fix vmin and vmax

    @ntolley
    ntolley committed May 22, 2024
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  10. Better export func

    @ntolley
    ntolley committed May 22, 2024
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  11. Type checks for input args

    @ntolley
    ntolley committed May 22, 2024
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  12. Better docs

    @ntolley
    ntolley committed May 22, 2024
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  13. Make time_idx accept np.int

    @ntolley
    ntolley committed May 22, 2024
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  14. Add self.ax

    @ntolley
    ntolley committed May 22, 2024
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  15. Add more type checks and simulation conditions

    @ntolley
    ntolley committed May 22, 2024
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  16. Make update_voltages private

    @ntolley
    ntolley committed May 22, 2024
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  17. Update example script

    @ntolley
    ntolley committed May 22, 2024
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  18. formatting 

    Co-authored-by: Mainak Jas <[email protected]>
    @ntolley @jasmainak
    ntolley and jasmainak committed May 22, 2024
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  19. respond to reviews and add colorbar functionality

    @ntolley
    ntolley committed May 22, 2024
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  20. add to api.rst

    @ntolley
    ntolley committed May 22, 2024
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  21. Fix test with smaller net

    @ntolley
    ntolley committed May 22, 2024
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  22. Use mesh_shape in example notebook

    @ntolley
    ntolley committed May 22, 2024
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  23. update plot_morphology docstring

    @ntolley
    ntolley committed May 22, 2024
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  24. refactor network_plotter tests

    @ntolley
    ntolley committed May 22, 2024
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  25. better test readability

    @ntolley
    ntolley committed May 22, 2024
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  26. refactor init

    @ntolley
    ntolley committed May 22, 2024
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  27. test animation export file exists

    @ntolley
    ntolley committed May 22, 2024
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  28. loop for init test

    @ntolley
    ntolley committed May 22, 2024
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  29. update whats_new

    @ntolley
    ntolley committed May 22, 2024
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Commits on May 23, 2024

  1. Apply suggestions from code review 

    Co-authored-by: Ryan Thorpe <[email protected]>
    @ntolley @rythorpe
    ntolley and rythorpe authored May 23, 2024
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