ParamyxovirusSlippageEvolution

Supporting information for Evolutionary history of mRNA editing in the Paramyxovirus phosphoprotein gene

Contains sequence alignments, .xml files to be run in BEAST2, and the output files of BEAST2 analyses

Files:

1. accession_numbers.tsv | Accession numbers of all sequences used in the article

2. W_functional_alignment.html | An html file to visualise the function C-terminal regions of the W protein (Fig 2)

3. editsites.tsv | Predicted or experimentally determined locations of edit sites in P gene

4. edit_sites_alignment.html | An html file to visualise edit sites (Fig 6) . Must be run in the same directory as editsites.tsv

5. PProteins.fasta | Predicted or experimentally determined P protein sequences

6. PProteins_unq.fasta | Predicted or experimentally determined P protein sequences (C-terminal regions only)

7. VProteins.fasta | Predicted or experimentally determined V protein sequences

8. VProteins_unq.fasta | Predicted or experimentally determined V protein sequences (C-terminal regions only)

9. WProteins.fasta | Predicted or experimentally determined W protein sequences

10. WProteins_unq.fasta | Predicted or experimentally determined W protein sequences (C-terminal regions only)

11. Phylogenetic tree files as inputs/outputs of BEAST2

• Lprotein_align.fasta

• Lprotein_beast2.log

• Lprotein_beast2.xml

• Lprotein_tree.nexus