fixed failing tests introduced by prior commits -- closes #247 #245
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Additional formatting taken from: https://github.com/r-lib/actions/blob/v2-branch/check-r-package/action.yaml | |
| on: | |
| push: | |
| branches: | |
| - dev | |
| - main | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macos-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| - name: Setup Pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - name: Setup dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - name: Extra dependencies | |
| id: extra-deps | |
| run: | | |
| install.packages("Matrix", type = "source", force = TRUE) | |
| install.packages("irlba", type = "source", force = TRUE) | |
| install.packages("TMB", type = "source", force = TRUE) | |
| install.packages("glmmTMB", type = "source", force = TRUE) | |
| shell: Rscript {0} | |
| working-directory: '.' | |
| - name: Check | |
| id: rcmdcheck | |
| run: | | |
| ## -------------------------------------------------------------------- | |
| options(crayon.enabled = TRUE) | |
| cat("check-dir-path=", file.path(getwd(), "check"), "\n", file = Sys.getenv("GITHUB_OUTPUT"), sep = "", append = TRUE) | |
| check_results <- rcmdcheck::rcmdcheck(args = c("--no-vignettes", "--no-manual", "--as-cran"), build_args = c("--no-build-vignettes", "--no-manual"), check_dir = "check", error_on = "error") | |
| shell: Rscript {0} | |
| working-directory: '.' | |
| - name: Show testthat output | |
| if: always() | |
| run: | | |
| ## -------------------------------------------------------------------- | |
| echo ::group::Show testthat output | |
| find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| echo ::endgroup:: | |
| shell: bash | |
| working-directory: '.' | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: ${{ steps.rcmdcheck.outputs.check-dir-path }} | |
| - name: Upload snapshots | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-testthat-snapshots | |
| path: ${{ steps.rcmdcheck.outputs.check-dir-path }}/**/tests*/testthat/_snaps | |
| if-no-files-found: ignore |