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Issue/16 - renamed configuration file #6

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cells2numbers wants to merge 43 commits intojr0th:masterjr0th/segmentation:masterfrom carpenterlab:issue/16carpenterlab/unet4nuclei:issue/16Copy head branch name to clipboard

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Commits

Commits on Dec 13, 2017

• Reorganizing code

  jccaicedo

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• Updating directories

  jccaicedo

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Commits on Dec 14, 2017

• Cleaning phase 2

  jccaicedo

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  16508e1

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• Fixed training notebook and added draft of evaluation

  jccaicedo

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• test submit

  

  Ubuntu

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• create random file list for training, test, validation

  timbecker83

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• Renamed helper to utils

  

  Ubuntu

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  a6703e0

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• added cetres data

  timbecker83

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• Fixed precision and recall computation

  

  Ubuntu

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• removed output

  timbecker83

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• Merge pull request #1 from cells2numbers/cetres

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  jccaicedo

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  eaa6231

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• Integrated data partitions code by Tim

  jccaicedo

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• added import to split, fixed bug (image size) in data_provider

  timbecker83

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• Merge pull request #3 from cells2numbers/master

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  jccaicedo

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Commits on Jan 17, 2018

• Updated notebooks and scripts for full cycle experimentation

  jccaicedo

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Commits on Jan 19, 2018

• Improved elastic deformation notebook

  jccaicedo

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Commits on Jan 22, 2018

• Implemented augmentation based on piecewiese affine transformations

  timbecker83

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• cleaned notebook output

  cells2numbers

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Commits on Jan 23, 2018

• Merge pull request #9 from jccaicedo/issues/6

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  cells2numbers

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• update

  cells2numbers

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  f991703

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• Merge branch 'master' of github.com:jccaicedo/unet4nuclei

  cells2numbers

  committed
  ac73a4c

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• removed unused code

  cells2numbers

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  a2e87de

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• removed unused code

  cells2numbers

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Commits on Jan 28, 2018

• Updated visualizations

  jccaicedo

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• Merge branch 'master' of github.com:jccaicedo/unet4nuclei

  jccaicedo

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Commits on Jan 29, 2018

• Load files on the fly. Fixes #7

  jccaicedo

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Commits on Jan 30, 2018

• Updated data processing and added weighted loss

  jccaicedo

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Commits on Feb 3, 2018

• Renamed notebooks, extended evaluation

  jccaicedo

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Commits on Feb 8, 2018

• Parameterized notebook 01

  jccaicedo

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• Manual merge of branch 8

  jccaicedo

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• Yes!

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  jccaicedo

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Commits on Feb 9, 2018

• Major refactoring!

  jccaicedo

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Commits on Feb 12, 2018

• Factorization done. Fixes #11

  jccaicedo

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  1105fa7

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• Merge pull request #14 from jccaicedo/issue/11

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  jccaicedo

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• removed unused flags

  cells2numbers

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Commits on Apr 13, 2018

• Change the precision metric to F1

  jccaicedo

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Commits on Jul 9, 2018

• add automatic dataset downloading

  santient

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Commits on Jul 11, 2018

• Merge pull request #15 from santient/master

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  jccaicedo

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  ad5221d

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• Updated scripts to use F1 metric

  jccaicedo

  committed
  980437a

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• Merge branch 'master' of github.com:jccaicedo/unet4nuclei

  jccaicedo

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• All code up to date

  jccaicedo

  committed
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Commits on Jul 25, 2018

• renamed bbbc039_seg_config.py

  cells2numbers

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• renamed file

  cells2numbers

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