This repo contains the notebooks for generating figures in the JUMP data production paper (Chandrasekaran et al. 2023). It also contains the profiles from the ORF subset of JUMP dataset (https://github.com/jump-cellpainting/dataset.git) as a submodule.
To run the Jupyter notebooks in this repository, install the conda environment using the 0.visualize-orf-data/environment.yml file.
We use a dual license in this repository. We license the source code as BSD 3-Clause, and license the data, results, and figures as CC0 1.0.