This code demonstrates the implementation of a Finite Impulse Response (FIR) band-pass filter for processing time-series data obtained from brain parcellation. It utilizes various Python libraries for signal processing, machine learning, and data visualization.
- Python 3.x
- Required libraries:
numpy
,matplotlib
,mne
,scipy
,sklearn
-
Data Loading:
- Ensure that you have EEG data in the BrainVision format (
.vhdr
file). - Uncomment and modify the
vhdr_file
variable to specify the path to your.vhdr
file. - Uncomment the relevant code to load the EEG data using
mne.io.read_raw_brainvision()
.
- Ensure that you have EEG data in the BrainVision format (
-
Data Visualization:
- Visualize the EEG signals using
raw.plot()
after loading the data.
- Visualize the EEG signals using
-
Synthetic EEG Data Generation:
- Synthetic EEG data is generated for demonstration purposes.
- You can adjust parameters such as sampling frequency, duration, and frequency components of the synthetic signal.
-
Filter Design:
- Define the sinc function to create filter coefficients using
sinc_filter()
. - Specify the desired frequency band using
low_cutoff
andhigh_cutoff
. - Number of filter taps (
numtaps
) can be adjusted for desired filter characteristics.
- Define the sinc function to create filter coefficients using
-
Signal Filtering:
- Apply the band-pass filter to the synthetic EEG signal using
np.convolve()
.
- Apply the band-pass filter to the synthetic EEG signal using
-
Feature Extraction:
- Extract features from the filtered signal, such as mean, standard deviation, skewness, and kurtosis of the Power Spectral Density (PSD) values.
-
Model Training and Evaluation:
- Train and evaluate machine learning models (Logistic Regression, Random Forest, SVM, Neural Network) using extracted features.
- Perform hyperparameter tuning for the Random Forest classifier.
- Evaluate model performance using accuracy metrics and cross-validation.
-
Plotting:
- Visualize the original synthetic EEG signal, the filtered signal, and the impulse response of the band-pass FIR filter.
- Ensure that all required libraries are installed (
numpy
,matplotlib
,mne
,scipy
,sklearn
). - Modify the code as necessary to adapt it to your specific EEG data and analysis requirements.
- Execute the code in a Python environment.
- This code serves as a demonstration and may require modifications for use with actual EEG data.
- Ensure proper understanding of the algorithms and methods employed before applying them to real-world data.