Merge branch 'develop' of github.com:kharchenkolab/Baysor

kharchenkolab · Sep 13, 2024 · 332e657 · 332e657
2 parents 4257d73 + 4d3fc4e
commit 332e657
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Showing 2 changed files with 5 additions and 4 deletions.
diff --git a/src/reporting/plots.jl b/src/reporting/plots.jl
@@ -134,7 +134,8 @@ end
 
 function plot_num_of_cells_per_iterarion(
         n_comps_dict::Vector{Dict{Int64, Int64}}; legend_position::Symbol=:lt,
-        inset_bbox::Tuple{Int, Int, Int, Int}=(370, 550, 180, 330)
+        figsize=(500, 350), inset_bbox::Tuple{Int, Int, Int, Int}=(300, 480, 150, 310),
+        legend_titlesize::Int=16, legend_labelsize::Int=14
     )
     (length(n_comps_dict) > 0) || error("No data about #components per iteration was stored")
 
@@ -144,7 +145,7 @@ function plot_num_of_cells_per_iterarion(
     n_components_per_iter = n_components_per_iter[sortperm(labels),:]
     labels = sort(labels)
 
-    fig = MK.Figure(size=(300, 200));
+    fig = MK.Figure(size=figsize);
     axis_args = (
         xticksvisible=false, yticksvisible=false, xticklabelsize=14, yticklabelsize=14,
         xlabel="Iteration", ylabel="Num. cells", xlabelpadding=0, ylabelpadding=0
@@ -154,7 +155,7 @@ function plot_num_of_cells_per_iterarion(
     for i in 1:size(n_components_per_iter, 1)
         MK.lines!(n_components_per_iter[i,:], label="$(labels[i])", color=ColorSchemes.Dark2_8[mod(i - 1, 8) + 1])
     end
-    MK.axislegend("Min #molecules"; position=legend_position, nbanks = 2, titlesize=16, labelsize=14)
+    MK.axislegend("Min #molecules"; position=legend_position, nbanks = 2, titlesize=legend_titlesize, labelsize=legend_labelsize)
     MK.xlims!(MK.current_axis(), 0, size(n_components_per_iter, 2))
     MK.ylims!(MK.current_axis(), 0, maximum(n_components_per_iter))
 

diff --git a/test/runtests.jl b/test/runtests.jl
@@ -241,7 +241,7 @@ end
                 polygons = BPR.boundary_polygons_auto(pos_data, df_spatial.cell; estimate_per_z=true)[2]
                 @test length(polygons) == (n_stacks + 1)
                 @test "2d" in keys(polygons)
-                @show all("$(Float64(v))" in keys(polygons) for v in unique(z_vals))
+                @test all("$(Float64(v))" in keys(polygons) for v in unique(z_vals))
 
                 n_stacks = 50
                 max_slices = 10