Skip to content

Commit

Permalink
build based on 1098505
Browse files Browse the repository at this point in the history
  • Loading branch information
Documenter.jl committed Nov 19, 2024
1 parent 138e1cd commit 6b35cda
Show file tree
Hide file tree
Showing 13 changed files with 15 additions and 14 deletions.
2 changes: 1 addition & 1 deletion dev/.documenter-siteinfo.json
View file
Original file line number Diff line number Diff line change
@@ -1 +1 @@
{"documenter":{"julia_version":"1.10.5","generation_timestamp":"2024-09-27T04:03:34","documenter_version":"1.7.0"}}
{"documenter":{"julia_version":"1.11.1","generation_timestamp":"2024-11-19T03:27:19","documenter_version":"1.7.0"}}
Binary file added dev/assets/logo.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 2 additions & 2 deletions dev/citation/index.html
View file
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<!DOCTYPE html>
<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Citation info · Baysor Documentation</title><meta name="title" content="Citation info · Baysor Documentation"/><meta property="og:title" content="Citation info · Baysor Documentation"/><meta property="twitter:title" content="Citation info · Baysor Documentation"/><meta name="description" content="Documentation for Baysor Documentation."/><meta property="og:description" content="Documentation for Baysor Documentation."/><meta property="twitter:description" content="Documentation for Baysor Documentation."/><script data-outdated-warner src="../assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.16.8/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL=".."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="../assets/documenter.js"></script><script src="../search_index.js"></script><script src="../siteinfo.js"></script><script src="../../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/catppuccin-mocha.css" data-theme-name="catppuccin-mocha"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/catppuccin-macchiato.css" data-theme-name="catppuccin-macchiato"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/catppuccin-frappe.css" data-theme-name="catppuccin-frappe"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/catppuccin-latte.css" data-theme-name="catppuccin-latte"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="../assets/themeswap.js"></script><script src="https://cloud.umami.is/script.js" data-website-id="b9c0c023-9682-4a74-8d3e-81a1d9a19e98" defer></script></head><body><div id="documenter"><nav class="docs-sidebar"><div class="docs-package-name"><span class="docs-autofit"><a href="../">Baysor Documentation</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../">Home</a></li><li><a class="tocitem" href="../installation/">Installation</a></li><li><span class="tocitem">Running Baysor</span><ul><li><a class="tocitem" href="../run/">Summary</a></li><li><a class="tocitem" href="../segmentation/">Cell segmentation</a></li><li><a class="tocitem" href="../preview/">Preview</a></li><li><a class="tocitem" href="../segfree/">Segmentation-free analysis</a></li><li><a class="tocitem" href="../configuration/">Advanced configuration</a></li></ul></li><li class="is-active"><a class="tocitem" href>Citation info</a></li><li><a class="tocitem" href="../examples/">Examples</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Citation info</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Citation info</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/kharchenkolab/Baysor" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/kharchenkolab/Baysor/blob/master/docs/src/citation.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="Citation"><a class="docs-heading-anchor" href="#Citation">Citation</a><a id="Citation-1"></a><a class="docs-heading-anchor-permalink" href="#Citation" title="Permalink"></a></h1><p>If you find Baysor useful for your publication, please cite:</p><pre><code class="nohighlight hljs">Petukhov V, Xu RJ, Soldatov RA, Cadinu P, Khodosevich K, Moffitt JR &amp; Kharchenko PV.
<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Citation info · Baysor</title><meta name="title" content="Citation info · Baysor"/><meta property="og:title" content="Citation info · Baysor"/><meta property="twitter:title" content="Citation info · Baysor"/><meta name="description" content="Documentation for Baysor."/><meta property="og:description" content="Documentation for Baysor."/><meta property="twitter:description" content="Documentation for Baysor."/><script data-outdated-warner src="../assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.16.8/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL=".."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="../assets/documenter.js"></script><script src="../search_index.js"></script><script src="../siteinfo.js"></script><script src="../../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/catppuccin-mocha.css" data-theme-name="catppuccin-mocha"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/catppuccin-macchiato.css" data-theme-name="catppuccin-macchiato"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/catppuccin-frappe.css" data-theme-name="catppuccin-frappe"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/catppuccin-latte.css" data-theme-name="catppuccin-latte"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="../assets/themeswap.js"></script><script src="https://cloud.umami.is/script.js" data-website-id="b9c0c023-9682-4a74-8d3e-81a1d9a19e98" defer></script></head><body><div id="documenter"><nav class="docs-sidebar"><a class="docs-logo" href="../"><img src="../assets/logo.png" alt="Baysor logo"/></a><div class="docs-package-name"><span class="docs-autofit"><a href="../">Baysor</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../">Home</a></li><li><a class="tocitem" href="../installation/">Installation</a></li><li><span class="tocitem">Running Baysor</span><ul><li><a class="tocitem" href="../run/">Summary</a></li><li><a class="tocitem" href="../segmentation/">Cell segmentation</a></li><li><a class="tocitem" href="../preview/">Preview</a></li><li><a class="tocitem" href="../segfree/">Segmentation-free analysis</a></li><li><a class="tocitem" href="../configuration/">Advanced configuration</a></li></ul></li><li class="is-active"><a class="tocitem" href>Citation info</a></li><li><a class="tocitem" href="../examples/">Examples</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Citation info</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Citation info</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/kharchenkolab/Baysor" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/kharchenkolab/Baysor/blob/master/docs/src/citation.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="Citation"><a class="docs-heading-anchor" href="#Citation">Citation</a><a id="Citation-1"></a><a class="docs-heading-anchor-permalink" href="#Citation" title="Permalink"></a></h1><p>If you find Baysor useful for your publication, please cite:</p><pre><code class="nohighlight hljs">Petukhov V, Xu RJ, Soldatov RA, Cadinu P, Khodosevich K, Moffitt JR &amp; Kharchenko PV.
Cell segmentation in imaging-based spatial transcriptomics.
Nat Biotechnol (2021). https://doi.org/10.1038/s41587-021-01044-w</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../configuration/">« Advanced configuration</a><a class="docs-footer-nextpage" href="../examples/">Examples »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Friday 27 September 2024 04:03">Friday 27 September 2024</span>. Using Julia version 1.10.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
Nat Biotechnol (2021). https://doi.org/10.1038/s41587-021-01044-w</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../configuration/">« Advanced configuration</a><a class="docs-footer-nextpage" href="../examples/">Examples »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Tuesday 19 November 2024 03:27">Tuesday 19 November 2024</span>. Using Julia version 1.11.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
Loading

0 comments on commit 6b35cda

Please sign in to comment.