hiddenMarkovModel

Literature list:

J. D. Chodera et al. "Bayesian hidden Markov model analysis of single-molecule force spectroscopy: Characterizing kinetics under measurement uncertainty" http://arxiv.org/abs/1108.1430 (2011)
L. R. Rabiner and B. H. Juang "An introduction to hidden Markov models", IEEE ASSp Magazine (1986)

Usage with MATLAB

Download the content of the "MATLAB" folder to a folder were MATLAB can find it and run

help GMM_cpp
help HMM_cpp

Name		Name	Last commit message	Last commit date
Latest commit History 37 Commits
MATLAB		MATLAB
include		include
.gitattributes		.gitattributes
.gitignore		.gitignore
Binner.cpp		Binner.cpp
Binner.h		Binner.h
GMM.cpp		GMM.cpp
GMM.h		GMM.h
GaussState.cpp		GaussState.cpp
GaussState.h		GaussState.h
HMM.cpp		HMM.cpp
HMM.h		HMM.h
HMMConfiguration.cpp		HMMConfiguration.cpp
HMMConfiguration.h		HMMConfiguration.h
InitialEmissionProbability.cpp		InitialEmissionProbability.cpp
InitialEmissionProbability.h		InitialEmissionProbability.h
default.json		default.json
gaussianMixtureModel.cpp		gaussianMixtureModel.cpp
hiddenMarkovModel.cpp		hiddenMarkovModel.cpp
readme.md		readme.md
simulateHMM.cpp		simulateHMM.cpp
test.json		test.json
typedefs.cpp		typedefs.cpp
typedefs.h		typedefs.h