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Kern-Ralph CoLab

Repositories associated with the collaborary research group of Andrew Kern and Peter Ralph

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  1. diploSHIC diploSHIC Public

    feature-based deep learning for the identification of selective sweeps

    Python 50 14

  2. locator locator Public

    deep learning prediction of geographic location from individual genome sequences

    Python 46 18

  3. popvae popvae Public

    genotype dimensionality reduction with a VAE

    Python 41 9

  4. ReLERNN ReLERNN Public

    Recombination Landscape Estimation using Recurrent Neural Networks

    Python 50 12

  5. spaceness spaceness Public

    Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data

    HTML 7 3

Repositories

Showing 10 of 24 repositories
  • msUtils Public

    A collection of C utilities for working with ms-formatted output files. Code is fast, flexible, and has many stats implemented

    kr-colab/msUtils’s past year of commit activity
    C 1 MIT 1 0 0 Updated Dec 13, 2024
  • disperseNN2 Public

    estimating dispersal distance from georeferenced polymorphisms

    kr-colab/disperseNN2’s past year of commit activity
    Python 3 MIT 2 7 1 Updated Nov 25, 2024
  • barnacle_simulation Public

    We are building a biologically and ecologically realistic SLiMulation of barnacles.

    kr-colab/barnacle_simulation’s past year of commit activity
    Slim 2 0 0 0 Updated Nov 15, 2024
  • discoal Public

    discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples

    kr-colab/discoal’s past year of commit activity
    TeX 48 GPL-3.0 10 3 0 Updated Oct 10, 2024
  • spatial_sims_standard Public

    standardizing spatial simulation slim scripts with a template

    kr-colab/spatial_sims_standard’s past year of commit activity
    Jupyter Notebook 3 1 0 3 Updated Oct 4, 2024
  • ReLERNN Public

    Recombination Landscape Estimation using Recurrent Neural Networks

    kr-colab/ReLERNN’s past year of commit activity
    Python 50 MIT 12 11 0 Updated Sep 27, 2024
  • locator Public

    deep learning prediction of geographic location from individual genome sequences

    kr-colab/locator’s past year of commit activity
    Python 46 18 8 2 Updated Sep 4, 2024
  • diploSHIC Public

    feature-based deep learning for the identification of selective sweeps

    kr-colab/diploSHIC’s past year of commit activity
    Python 50 MIT 14 6 2 Updated Sep 3, 2024
  • mapNN Public

    neural network for estimating demographic maps from SNPs

    kr-colab/mapNN’s past year of commit activity
    Python 9 MIT 1 3 0 Updated Jun 30, 2024
  • popvae Public

    genotype dimensionality reduction with a VAE

    kr-colab/popvae’s past year of commit activity
    Python 41 9 3 1 Updated Apr 23, 2024
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