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Use optimized parameters
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See #397
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marcelm committed Feb 27, 2024
1 parent 6fd4c5d commit 12f69b5
Showing 1 changed file with 6 additions and 6 deletions.
12 changes: 6 additions & 6 deletions src/indexparameters.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -35,13 +35,13 @@ struct Profile {
static auto max{std::numeric_limits<int>::max()};

static std::vector<Profile> profiles = {
Profile{ 50, 90, 20, -4, -3, 2},
Profile{100, 110, 20, -4, -2, 2},
Profile{ 50, 70, 18, -4, -2, 1},
Profile{ 75, 90, 20, -4, -3, 2},
Profile{100, 110, 19, -4, 0, 3},
Profile{125, 135, 20, -4, -1, 4},
Profile{150, 175, 20, -4, 1, 7},
Profile{250, 275, 20, -4, 4, 13},
Profile{300, 375, 22, -4, 2, 12},
Profile{400, max, 23, -6, 2, 12},
Profile{150, 175, 21, -4, 2, 6},
Profile{250, 375, 22, -4, 4, 13},
Profile{400, max, 24, -6, 6, 13},
};

/* Create an IndexParameters instance based on a given read length.
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