Merge pull request #451 from ksahlin/mcs-test

Add a test for multi-context seeds
ksahlin · Oct 7, 2024 · 3209621 · 3209621
2 parents 2491b3d + fc34ebf
commit 3209621
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diff --git a/tests/phix.mcs.se.paf b/tests/phix.mcs.se.paf
@@ -0,0 +1,11 @@
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diff --git a/tests/run.sh b/tests/run.sh
@@ -116,4 +116,9 @@ strobealign --no-PG --eqx --rg-id 1 --rg SM:sample --rg LB:library tests/phix.fa
 diff tests/phix.se.sam multiblock.sam
 rm multiblock.fastq.gz multiblock.sam
 
+# Single-end PAF with multi-context seeds
+strobealign --mcs -x tests/phix.fasta tests/phix.1.fastq | tail -n 11 > phix.mcs.se.paf
+diff tests/phix.mcs.se.paf phix.mcs.se.paf
+rm phix.mcs.se.paf
+
 echo "Success"