Add a debugging compilation option for showing list of NAMs #427
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
|
approved |
If `cmake` is run with `-DTRACE=ON`, then some `#ifdef`s are active that make strobealign print the list of found NAMs for each query. I find myself adding this type of output quite often for debugging purposes, and think it would be nice to just have this part of the code, disabled by default, but easily enabled.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
If
cmakeis run with-DTRACE=ON, then some#ifdefs become active that make strobealign print the list of found NAMs for each query.I find myself adding this type of output quite often for debugging purposes, and think it would be nice to have this as part of the code, disabled by default, but easily enabled.
CHUNK_SIZEis forced to 1 when tracing is on to ensure that SAM/PAF output comes right after the corresponding tracing output. (Otherwise you get the tracing output for all queries within one chunk follewd by all the SAM/PAF output for all queries in the chunk.)