add plotting tests

scimap/tests/test_pl.py

@@ -0,0 +1,49 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+Created on Tue Apr 23 21:22:21 2024
+@author: aj
+Test plotting functions
+"""
+
+import pytest
+import os
+import anndata as ad
+import matplotlib.pyplot as plt
+
+# load data
+@pytest.fixture
+def adata():
+    image_path = os.getcwd() + '/scimap/tests/scimapExampleData/scimapExampleData.h5ad'
+    adata = ad.read_h5ad(image_path)
+    return adata
+
+
+# heatmap
+def test_heatmap (adata):
+    from scimap.plotting.heatmap import heatmap
+    heatmap(adata, groupBy='phenotype', standardScale='column')
+
+
+
+
+# markerCorrelation
+# groupCorrelation
+# distPlot
+# densityPlot2D
+# cluster_plots
+# umap
+# foldchange
+# spatial_scatterPlot
+# spatial_distance
+# spatial_interaction
+# spatialInteractionNetwork
+# spatial_pscore
+# stacked_barplot
+# pie
+# voronoi
+
+
+# image_viewer
+# addROI_image
+# gate_finder