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add legacy folder for og implementation
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@@ -201,6 +201,3 @@ cython_debug/ | |
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| # Ignore vscode stuff. | ||
| .vscode/ | ||
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| # Ignore legacy stuff. | ||
| legacy/ | ||
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| General structure of git repo | ||
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| [PLEIADES] | ||
| docs/ | ||
| - Makefile | ||
| - _build/ | ||
| - api.rst | ||
| - conf.py | ||
| - examples.rst | ||
| - generated | ||
| - index.rst | ||
| - make.bat | ||
| - requirements.in | ||
| - requirements.txt | ||
| - source/ | ||
| - modules.rst | ||
| - pleiades.rst | ||
| - usage.rst | ||
| notes/ | ||
| - Pleiades.notes [this file] | ||
| - SammyInputFile.notes | ||
| - SammyOutputFile.notes | ||
| - SammyParameterFile.notes | ||
| examples/ | ||
| - configFiles/ | ||
| - nat_europium.ini | ||
| - uranium.ini | ||
| - data/ | ||
| - natEu.twenty | ||
| - u235-u238.twenty | ||
| - Notebooks/ | ||
| - natEu_fit_tutorial.ipynb | ||
| - u_fit_tutorial.ipynb | ||
| - scripts/ | ||
| - makeCompoundFit.py | ||
| nucDataLibs/ | ||
| - isotopeInfo/ | ||
| - isotopes.info | ||
| - mass.mas20 | ||
| - neutrons.list | ||
| - resonanceTables/ | ||
| - res_endf8.endf | ||
| - xSections/ | ||
| - [cross-section files for select isotopes] | ||
| pleiades/ | ||
| - __pycache__ | ||
| - __init__.py | ||
| - sammyInput.py | ||
| - sammyPlotter.py | ||
| - nucData.py | ||
| - simData.py | ||
| tests/ | ||
| - test_nucData.py | ||
| - test_sammyInput.py | ||
| - test_sammyRunner.py | ||
| - test_sammyUtils.py |
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| Max Number of Columns in the fortran input file = 80 | ||
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| Data input types | ||
| “A” can be numbers or letters or symbols | ||
| “F” requires a number with a decimal point | ||
| “I” implies a number without a decimal point like an integer and requires that the number be in the right-most columns | ||
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| Classes: | ||
| Card 1 - | ||
| Line 1: | ||
| 1-80 columns, A "TITLE" | ||
| Card 2 - | ||
| Line 1: | ||
| 01-10 columns, A "ELMNT"; # Sample element’s name | ||
| 11-20 columns, F "AW"; # Atomic weight (amu) | ||
| 21-30 columns, F "EMIN"; # Minimum energy for this data set (eV) | ||
| 31-40 columns, F "EMAX"; # Maximum energy for this data set (eV) | ||
| 41-45 columns, I "NEPNTS"; # Number of points to be used in generating artificial energy grid (default = 10001) | ||
| 46-50 columns, I "ITMAX"; # Number of iterations (default = 2) | ||
| 51-52 columns, I "ICORR"; # Correlations smaller than this value (divided by 100) are not to be printed | ||
| 53-55 columns, I "NXTRA"; # Number of extra points to be added between each pair of data points for auxiliary energy grid | ||
| 56-57 columns, I "IPTDOP"; # Number of points to be added to auxiliary energy grid across small resonances | ||
| 59-60 columns, I "IPTWID"; # Determines the number of points to be added to auxiliary grid in tails of small resonances | ||
| 61-70 columns, I "IXXCHN"; # Number of energy channels in ODF-type data file to be ignored | ||
| 71-72 columns, I "NDIGIT"; # Number of digits forcompact format for covariance matrix | ||
| 73-74 columns, I "IDROPP"; # The input resonance parameter covariance matrix will be modified before being used in the fitting procedure | ||
| 75-80 columns, I "MATNUM" # ENDF Material Number | ||
| Card 3 - | ||
| Note: Alphanumeric information concerning program options. | ||
| Each command is its own line. This is followed by a blank line. | ||
| Lines: various command statements. | ||
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| Card 4 - | ||
| Note: This card set is present only when the phrase “KEY WORD PARTICLE PAir | ||
| definitions are given” occurs in card set 3 above | ||
| Line 1: | ||
| [FILL IN LATER] | ||
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| Card 5 - | ||
| Line 1: | ||
| 01-10 columns, F "TEMP"; # Effective temperature of the sample (K); | ||
| 11-20 columns, F "DIST"; # Flight-path length (m) | ||
| 21-30 columns, F "DELTAL"; # That portion of the Gaussian resolution width attributed to the flight-path length (m). | ||
| 31-40 columns, F "DELTAE"; # E-folding width of exponential resolution function (μs); | ||
| 41-50 columns, F "DELTAG"; # The absolute value of DELTAG is the FWHM (μs) of a Gaussian resolution function representing the burst width | ||
| 51-60 columns, F "DELTTT"; # Approximate step size for the Effective Temperature for the Leal-Hwang method of Doppler broadening (K). | ||
| 61-70 columns, F "ELOWBR"; # The energy below which no broadening is wanted, for highenergy Gaussian approximation to Doppler broadening (eV) | ||
| 71-80 columns, F "DDDEEE"; # Range for straight-line energy average resolution function (eV) | ||
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| Card 6 - | ||
| Note: This card set is included only if DELTAG < 0 in card set 5. | ||
| Line 1: | ||
| 01-10 columns, F "DELTAB" # Minimum channel width for interval from EMIN to EMAX (μs) | ||
| 11-15 columns, I "NCF" # Number of crunch boundaries (energy intervals) | ||
| Line 2: | ||
| 01-10 columns, F "BCF(I)" # maximum energy for this crunch factor (read in order of increasing energy) (eV) | ||
| 11-20 columns, F "CF(I)" # crunch factors (integer units of DELTAB) | ||
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| Card 7 - | ||
| Line 1: | ||
| 01-10 columns, F "CRFN" # Channel radius (fermi) | ||
| 11-20 columns, F "THICK" # Sample thickness (atoms/barn) | ||
| 21-30 columns, F "DCOVA" # Constant term in data covariance (default = 0.0) | ||
| 31-40 columns, F "DCOVB" # Linear term in data covariance (default = 0.0) | ||
| 41-50 columns, F "VMIN" # Minimum absolute uncertainty (standard deviation) on experimental data | ||
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| Card 8 - | ||
| Note: Line 1 will contain a "command" string that represents the type | ||
| of data, which must begin in first column on the line. Only those | ||
| characters in CAPITAL letters are required. Lines 2 and greater | ||
| are not needed unless "DIFFErential elastic cross sections" or | ||
| "DIFFERENTIAL REaction" is selected. | ||
| Line 1: | ||
| 1-80 columns, A "CROSS" | ||
| Line 2-N: | ||
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| Card 9 - | ||
| Note: No longer used. | ||
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| Card 10.1 - | ||
| Note: It is no longer necessary to have “USE NEW SPIN GROUP Format” in | ||
| card set 3 in order to use this alternative; card set 10.1 is now | ||
| the default. | ||
| Line 2 is repeated for a total of (NENT + NEXT) lines! | ||
| Line 1 followed by multiple line 2s is repeated for all spin groups | ||
| Line 1: | ||
| 1-3 column, I "JJ" # Spin group number: 1,2,3, ... | ||
| 5 column, A "EXCL" # Flag to exclude this spin group from calculation of cross section | ||
| 6-10 column, I "NENT(JJ)" # Number of entrance channels (must be > 0) | ||
| 11-15 column, I "NEXT(JJ)" # Number of exit channels, excluding those that are also entrance channels (can be zero) | ||
| 16-20 column, F "SPINJ(JJ)" # Integer or half-integer spin for resonances in group JJ | ||
| 21-30 column, F "ABNDNC(JJ)" # Isotopic abundance for this spin group (These values may be overwritten in the PARameter file) | ||
| 31-35 column, F "SPINI" # Ground-state spin for the nuclide (i.e., for the target particle) | ||
| 35-80 column, A "Comments" # Use this to state which nuclei is covered by this spin group! | ||
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| Line 2: | ||
| 4-5, I "N" # Channel number (One line is needed for each channel!) | ||
| 6-8, I "KZ1(N,JJ)" # Charge number Z1 for the first particle in this channel | ||
| 10, I "LPENT(N,JJ)" # Is SAMMY to calculate the penetrability for channel N, spin group JJ? | ||
| 11-13, I "KZ2(N,JJ)" # Charge number Z2 for the second particle in this channel | ||
| 15, I "ISHIFT(N,JJ)" # 1 if calculate shift; 0 Otherwise | ||
| 18, I "IFEXCL" # 1 if exclude this channel from final-state calculation for reaction cross section; 0 if include | ||
| 19-20, I "LSPIN" # Orbital angular momentum for channel | ||
| 21-30, F "CHSPIN(N,JJ)" # Channel spin (integer or halfinteger, sign implies parity) | ||
| 31-40, F "ENBND(N,JJ)" # Boundary condition (eV). Used only if ISHIFT = 1 | ||
| 41-50, F "ECHAN(N,JJ)" # Excitation energy of residual nucleus in an inelastic channel (eV) | ||
| 51-55, F "RDEFF(N,JJ)" # Effective radius (fermi) | ||
| 56-60, F "RDTRU(N,JJ)" # True radius (fermi) (Value may be overwritten in the PARameter file.) | ||
| 61-70, F "EMM1(N,JJ)" # Mass of first particle in this channel (that is, of the target nuclide, in the case of an incident channel) (amu) | ||
| 71-80, F "EMM2(N,JJ)" # Mass of second particle in the channel (that is, of the neutron or other incident particle, for entrance channels) (amu) | ||
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| Run time notes: | ||
| Need to use the lowest mass in a compound nuclei fit otherwise you get this: | ||
| *************************************************************************** | ||
| * Warning -- Mass used to determine limits for auxiliary grid (for Dopplr * | ||
| * and multiple-scattering corrections) may be too big. SAMMY is using the * | ||
| * mass from nuclide number 2 (238.050770), because that is closest to the * | ||
| * mass from Line 2 of the INPut file (238.050800). For more accurate * | ||
| * results, use the mass of the smallest nuclide (235.043940). (Expect * | ||
| * longer runtime if you change to the smaller mass.) * | ||
| *************************************************************************** |
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| LST FILE for plotting | ||
| Column 1: Energy (Units are as specified by input command. If not specified, then units are eV if appropriate, otherwise keV.) | ||
| Column 2: Experimental cross section (barns) | ||
| Column 3: Absolute uncertainty in experimental cross section (barns) | ||
| Column 4: Zeroth-order theoretical cross section as evaluated by SAMMY (barns) | ||
| Column 5: Final theoretical cross section as evaluated by SAMMY (barns) | ||
| Column 6: Experimental transmission (dimensionless) | ||
| Column 7: Absolute uncertainty in experimental transmission | ||
| Column 8: Zeroth-order theoretical transmission as evaluated by SAMMY | ||
| Column 9: Final theoretical transmission as evaluated by SAMMY | ||
| Column 10: Theoretical uncertainty on section 4 if data were total cross section, or on section 8 if data were transmission | ||
| Column 11: Theoretical uncertainty on section 5 or section 9 | ||
| Column 12: Adjusted energy initially, when t0 and L0 are to be varied. See Section III.E.8 of this manual. | ||
| Column 13: Adjusted energy |
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