trying to figure out how to use github in conjunction with mybinder.org so other people can remotely run the software without having to install any software. I can do that via Jupyter notebooks (for R or Python). Can I also just use an rmarkdown file? If I am using R libraries from Bioconductor that may complicate things since mybinder can use MRAN to use a snapshot of many R libraries, but that does not include those in Bioconductor I think.
https://mybinder.readthedocs.io/en/latest/sample_repos.html can be used with rstudio and rstudio runs rmarkdown. So try to base my stuff on the example given here for rstudio ... they also have an example with ipywidgets ... and other interactive methods.
https://github.com/sneumann/bioc_notebooks Provide Binder'ised jupyter notebooks from Bioconductor Vognettes https://www.biorxiv.org/content/10.1101/144816v1.full.pdf BiocImageBuilder used to generate 3 sample interactive mybinder projects for Bioconductor workflows.