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Merge branch 'addEuropePmc-710' into 'main'
Obtem número de citações da Europe PMC See merge request softwares-pkp/plugins_ojs/submissionsCitationsReport!2
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,57 @@ | ||
| <?php | ||
|
|
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| namespace APP\plugins\reports\submissionsCitationsReport\classes; | ||
|
|
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| use PKP\core\DataObject; | ||
| use APP\submission\Submission; | ||
|
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| class SubmissionWithCitations extends DataObject | ||
| { | ||
| public function setSubmissionId(int $submissionId) | ||
| { | ||
| $this->setData('submissionId', $submissionId); | ||
| } | ||
|
|
||
| public function getSubmissionId(): int | ||
| { | ||
| return $this->getData('submissionId'); | ||
| } | ||
|
|
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| public function setSubmission(Submission $submission) | ||
| { | ||
| $this->setData('submission', $submission); | ||
| } | ||
|
|
||
| public function getSubmission(): Submission | ||
| { | ||
| return $this->getData('submission'); | ||
| } | ||
|
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| public function setCrossrefCitationsCount(int $crossrefCitationsCount) | ||
| { | ||
| $this->setData('crossrefCitationsCount', $crossrefCitationsCount); | ||
| } | ||
|
|
||
| public function getCrossrefCitationsCount(): int | ||
| { | ||
| return $this->getData('crossrefCitationsCount'); | ||
| } | ||
|
|
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| public function setEuropePmcCitationsCount(int $europePmcCitationsCount) | ||
| { | ||
| $this->setData('europePmcCitationsCount', $europePmcCitationsCount); | ||
| } | ||
|
|
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| public function getEuropePmcCitationsCount(): int | ||
| { | ||
| return $this->getData('europePmcCitationsCount'); | ||
| } | ||
|
|
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| public static function __set_state($dump) | ||
| { | ||
| $obj = new SubmissionWithCitations(); | ||
| $obj->setAllData($dump['_data']); | ||
|
|
||
| return $obj; | ||
| } | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,132 @@ | ||
| <?php | ||
|
|
||
| namespace APP\plugins\reports\submissionsCitationsReport\classes\clients; | ||
|
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| use APP\core\Application; | ||
| use GuzzleHttp\Psr7\Request; | ||
| use GuzzleHttp\Pool; | ||
| use GuzzleHttp\Exception\ClientException; | ||
|
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| class EuropePmcClient | ||
| { | ||
| private $guzzleClient; | ||
|
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| public const EUROPE_PMC_API_URL = 'https://www.ebi.ac.uk/europepmc/webservices/rest'; | ||
|
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| public function __construct($guzzleClient = null) | ||
| { | ||
| if (!is_null($guzzleClient)) { | ||
| $this->guzzleClient = $guzzleClient; | ||
| } else { | ||
| $this->guzzleClient = Application::get()->getHttpClient(); | ||
| } | ||
| } | ||
|
|
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| public function getSubmissionsCitationsCount(array $submissions): array | ||
| { | ||
| $idsAndSources = $this->getSubmissionsIdAndSource($submissions); | ||
| $submissionsCitationsCount = $this->getCitationsCountByIdAndSource($idsAndSources); | ||
|
|
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| return $submissionsCitationsCount; | ||
| } | ||
|
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| public function getSubmissionsIdAndSource(array $submissions): array | ||
| { | ||
| $requests = []; | ||
| $idsAndSources = []; | ||
|
|
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| foreach ($submissions as $submission) { | ||
| $publication = $submission->getCurrentPublication(); | ||
| $doi = $publication->getDoi(); | ||
|
|
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| if (empty($doi)) { | ||
| $idsAndSources[$submission->getId()] = []; | ||
| continue; | ||
| } | ||
|
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| $requestUrl = htmlspecialchars(self::EUROPE_PMC_API_URL . "/search?query=DOI:$doi") . '&format=json'; | ||
| $requests[$submission->getId()] = new Request( | ||
| 'GET', | ||
| $requestUrl | ||
| ); | ||
| } | ||
|
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| $pool = new Pool($this->guzzleClient, $requests, [ | ||
| 'concurrency' => 5, | ||
| 'fulfilled' => function ($response, $index) use (&$idsAndSources, $submissions) { | ||
| $responseBody = json_decode($response->getBody(), true); | ||
| $idAndSource = []; | ||
|
|
||
| if (isset($responseBody['resultList'])) { | ||
| $results = $responseBody['resultList']['result']; | ||
| $submission = $submissions[$index]; | ||
| $submissionDoi = strtolower($submission->getCurrentPublication()->getDoi()); | ||
|
|
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| foreach ($results as $result) { | ||
| if (strtolower($result['doi']) == $submissionDoi) { | ||
| $idAndSource = [ | ||
| 'id' => $result['id'], | ||
| 'source' => $result['source'] | ||
| ]; | ||
| break; | ||
| } | ||
| } | ||
| } | ||
|
|
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| $idsAndSources[$index] = $idAndSource; | ||
| }, | ||
| 'rejected' => function ($reason, $index) use (&$idsAndSources) { | ||
| $idsAndSources[$index] = []; | ||
| }, | ||
| ]); | ||
|
|
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| $promise = $pool->promise(); | ||
| $promise->wait(); | ||
|
|
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| return $idsAndSources; | ||
| } | ||
|
|
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| public function getCitationsCountByIdAndSource(array $submissionsIdsAndSources): array | ||
| { | ||
| $requests = []; | ||
| $submissionsCitationsCount = []; | ||
|
|
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| foreach ($submissionsIdsAndSources as $submissionId => $idAndSource) { | ||
| if (empty($idAndSource)) { | ||
| $submissionsCitationsCount[$submissionId] = 0; | ||
| continue; | ||
| } | ||
|
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| $id = $idAndSource['id']; | ||
| $source = $idAndSource['source']; | ||
|
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| $requestUrl = htmlspecialchars(self::EUROPE_PMC_API_URL . "/$source/$id/citations?format=json"); | ||
| $requests[$submissionId] = new Request( | ||
| 'GET', | ||
| $requestUrl | ||
| ); | ||
| } | ||
|
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| $pool = new Pool($this->guzzleClient, $requests, [ | ||
| 'concurrency' => 5, | ||
| 'fulfilled' => function ($response, $index) use (&$submissionsCitationsCount) { | ||
| $responseJson = json_decode($response->getBody(), true); | ||
| $citationsCount = 0; | ||
|
|
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| if (isset($responseJson['hitCount'])) { | ||
| $citationsCount = $responseJson['hitCount']; | ||
| } | ||
|
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| $submissionsCitationsCount[$index] = $citationsCount; | ||
| }, | ||
| 'rejected' => function ($reason, $index) use (&$idsAndSources) { | ||
| $submissionsCitationsCount[$index] = 0; | ||
| }, | ||
| ]); | ||
|
|
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| $promise = $pool->promise(); | ||
| $promise->wait(); | ||
|
|
||
| return $submissionsCitationsCount; | ||
| } | ||
| } |
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