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@leylabmpi

Department of Microbiome Science at the MPI for Biology

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  1. Struo2 Struo2 Public

    Scalable creating/updating of metagenome profiling databases

    Jupyter Notebook 58 8

  2. Struo Struo Public

    Ley Lab MetaGenome Profiler DataBase generator

    Jupyter Notebook 46 4

  3. DeepMAsED DeepMAsED Public

    Deep learning for Metagenome Assembly Error Detection

    Jupyter Notebook 26 6

  4. SynTracker SynTracker Public

    SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same species) using genome synteny.

    Python 25 5

  5. pyTecanFluent pyTecanFluent Public

    Python interface to TECAN Fluent liquid handling robot

    Python 18 2

  6. endoR endoR Public

    Code and manual of the endoR R-package (Ruaud et al, in preparation).

    Jupyter Notebook 12

Repositories

Showing 10 of 47 repositories
  • SynTracker Public

    SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same species) using genome synteny.

    leylabmpi/SynTracker’s past year of commit activity
    Python 25 5 1 7 Updated Sep 19, 2024
  • LeyLabRMisc Public

    R package of Ley Lab misc functions, rmd templates, etc.

    leylabmpi/LeyLabRMisc’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 2 0 1 Updated Aug 20, 2024
  • qiime_2_ll_quick_viewer Public
    leylabmpi/qiime_2_ll_quick_viewer’s past year of commit activity
    Python 3 MIT 2 0 14 Updated Aug 13, 2024
  • ll_pipeline_utils Public

    Utility scripts for running Ley Lab pipelines

    leylabmpi/ll_pipeline_utils’s past year of commit activity
    Python 1 0 0 0 Updated Jun 12, 2024
  • resmico Public

    Identifying misassemblies via deep learning

    leylabmpi/resmico’s past year of commit activity
    Jupyter Notebook 11 MIT 1 6 0 Updated May 1, 2024
  • Synteny_analyses Public
    leylabmpi/Synteny_analyses’s past year of commit activity
    R 0 0 0 0 Updated Apr 22, 2024
  • pyTecanFluent Public

    Python interface to TECAN Fluent liquid handling robot

    leylabmpi/pyTecanFluent’s past year of commit activity
    Python 18 MIT 2 0 0 Updated Apr 18, 2024
  • Schoen_Christensenella_2023 Public
    leylabmpi/Schoen_Christensenella_2023’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 11, 2023
  • endoR Public

    Code and manual of the endoR R-package (Ruaud et al, in preparation).

    leylabmpi/endoR’s past year of commit activity
    Jupyter Notebook 12 GPL-3.0 0 0 0 Updated Oct 12, 2023
  • ll_computer Public

    Ley Lab server admin tools

    leylabmpi/ll_computer’s past year of commit activity
    Python 0 0 0 0 Updated Jun 15, 2023
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