Update dependency commons-cli:commons-cli to v1.9.0 #163
GitHub Actions / Test Results
failed
Aug 6, 2024 in 0s
14 fail, 232 pass in 17s
246 tests 232 ✅ 17s ⏱️
56 suites 0 💤
56 files 14 ❌
Results for commit b5c394f.
Annotations
Check warning on line 0 in org.lifstools.mztab2.io.validators.AssayValidatorTest
github-actions / Test Results
testValidateRefineAssayHasMsRun (org.lifstools.mztab2.io.validators.AssayValidatorTest) failed
io/target/surefire-reports/TEST-org.lifstools.mztab2.io.validators.AssayValidatorTest.xml [took 0s]
Raw output
expected:<1> but was:<2>
java.lang.AssertionError: expected:<1> but was:<2>
at org.junit.Assert.fail(Assert.java:89)
at org.junit.Assert.failNotEquals(Assert.java:835)
at org.junit.Assert.assertEquals(Assert.java:647)
at org.junit.Assert.assertEquals(Assert.java:633)
at org.lifstools.mztab2.io.validators.AssayValidatorTest.testValidateRefineAssayHasMsRun(AssayValidatorTest.java:83)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
at java.base/java.lang.Thread.run(Thread.java:840)
Check warning on line 0 in org.lifstools.mztab2.io.MzTabWriterTest
github-actions / Test Results
testReadWriteRoundtripWithJacksonLda2MouseLiver (org.lifstools.mztab2.io.MzTabWriterTest) failed
io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MzTabWriterTest.xml [took 0s]
Raw output
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[6] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[7] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[8] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[9] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[10] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[11] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[12] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[13] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[14] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[15] <name>" MUST be defined in the metadata section.
java.lang.AssertionError:
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[6] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[7] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[8] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[9] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[10] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[11] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[12] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[13] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[14] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[15] <name>" MUST be defined in the metadata section.
at org.junit.Assert.fail(Assert.java:89)
at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:44)
at org.lifstools.mztab2.io.MzTabWriterTest.testReadWriteRoundtripWithJacksonLda2MouseLiver(MzTabWriterTest.java:330)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.rules.ExternalResource$1.evaluate(ExternalResource.java:54)
at org.junit.rules.RunRules.evaluate(RunRules.java:20)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testReadWriteRoundtripWithJacksonLda2MouseLiver
################################################################################
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[6] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[7] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[8] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[9] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[10] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[11] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[12] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[13] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[14] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[15] <name>" MUST be defined in the metadata section.
Check warning on line 0 in org.lifstools.mztab2.io.MzTabWriterTest
github-actions / Test Results
testReadWriteRoundtripWithJacksonLda2StdMix (org.lifstools.mztab2.io.MzTabWriterTest) failed
io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MzTabWriterTest.xml [took 0s]
Raw output
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
java.lang.AssertionError:
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
at org.junit.Assert.fail(Assert.java:89)
at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:44)
at org.lifstools.mztab2.io.MzTabWriterTest.testReadWriteRoundtripWithJacksonLda2StdMix(MzTabWriterTest.java:312)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.rules.ExternalResource$1.evaluate(ExternalResource.java:54)
at org.junit.rules.RunRules.evaluate(RunRules.java:20)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testReadWriteRoundtripWithJacksonLda2StdMix
################################################################################
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
Check warning on line 0 in uk.ac.ebi.pride.jmztab2.utils.parser.MTDLineParserTest
github-actions / Test Results
testCreateMetadata (uk.ac.ebi.pride.jmztab2.utils.parser.MTDLineParserTest) failed
io/target/surefire-reports/TEST-uk.ac.ebi.pride.jmztab2.utils.parser.MTDLineParserTest.xml [took 0s]
Raw output
java.lang.AssertionError
at org.junit.Assert.fail(Assert.java:87)
at org.junit.Assert.assertTrue(Assert.java:42)
at org.junit.Assert.assertTrue(Assert.java:53)
at uk.ac.ebi.pride.jmztab2.utils.parser.MTDLineParserTest.testCreateMetadata(MTDLineParserTest.java:627)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.rules.ExternalResource$1.evaluate(ExternalResource.java:54)
at org.junit.rules.ExternalResource$1.evaluate(ExternalResource.java:54)
at org.junit.rules.RunRules.evaluate(RunRules.java:20)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testCreateMetadata
################################################################################
Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest
github-actions / Test Results
testExamples[5: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed
io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 0s]
Raw output
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
java.lang.AssertionError:
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
at org.junit.Assert.fail(Assert.java:89)
at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[5: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: StandardMix_positive_exportPositionLevel.mzTab
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest
github-actions / Test Results
testExamples[2: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed
io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 1s]
Raw output
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[6] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[7] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[8] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[9] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[10] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[11] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[12] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[13] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[14] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[15] <name>" MUST be defined in the metadata section.
java.lang.AssertionError:
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[6] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[7] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[8] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[9] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[10] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[11] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[12] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[13] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[14] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[15] <name>" MUST be defined in the metadata section.
at org.junit.Assert.fail(Assert.java:89)
at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[2: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: MouseLiver_negative_mztab_null-colunit.txt
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[6] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[7] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[8] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[9] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[10] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[11] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[12] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[13] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[14] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[15] <name>" MUST be defined in the metadata section.
Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest
github-actions / Test Results
testExamples[4: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed
io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 0s]
Raw output
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
java.lang.AssertionError:
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
at org.junit.Assert.fail(Assert.java:89)
at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[4: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: StandardMix_negative_exportSpeciesLevel.mzTab
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest
github-actions / Test Results
testExamples[6: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed
io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 0s]
Raw output
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
java.lang.AssertionError:
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
at org.junit.Assert.fail(Assert.java:89)
at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[6: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: StandardMix_positive_exportSpeciesLevel.mzTab
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest
github-actions / Test Results
testExamples[1: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed
io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 1s]
Raw output
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[6] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[7] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[8] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[9] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[10] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[11] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[12] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[13] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[14] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[15] <name>" MUST be defined in the metadata section.
java.lang.AssertionError:
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[6] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[7] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[8] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[9] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[10] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[11] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[12] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[13] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[14] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[15] <name>" MUST be defined in the metadata section.
at org.junit.Assert.fail(Assert.java:89)
at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[1: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: MouseLiver_negative.mzTab
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[6] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[7] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[8] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[9] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[10] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[11] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[12] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[13] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[14] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[15] <name>" MUST be defined in the metadata section.
Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest
github-actions / Test Results
testExamples[3: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed
io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 0s]
Raw output
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
java.lang.AssertionError:
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
at org.junit.Assert.fail(Assert.java:89)
at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[3: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: StandardMix_negative_exportPositionLevel.mzTab
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest
github-actions / Test Results
testExamples[9: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed
io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 0s]
Raw output
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
java.lang.AssertionError:
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
at org.junit.Assert.fail(Assert.java:89)
at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[9: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: gcxgc-ms-example.mztab
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest
github-actions / Test Results
testExamples[10: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed
io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 0s]
Raw output
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
java.lang.AssertionError:
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
at org.junit.Assert.fail(Assert.java:89)
at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[10: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: minimal-m-2.0.mztab
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest
github-actions / Test Results
testExamples[11: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed
io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 0s]
Raw output
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
java.lang.AssertionError:
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
at org.junit.Assert.fail(Assert.java:89)
at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[11: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: minimal-m-2.0.mztab
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest
github-actions / Test Results
testExamples[12: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed
io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 0s]
Raw output
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
java.lang.AssertionError:
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
at org.junit.Assert.fail(Assert.java:89)
at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[12: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: minimal-m-2.0.mztab
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
Loading