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@linnarsson-lab

Linnarsson Lab

Software developed by members of the Linnarsson lab at Karolinska Institutet

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  1. loompy loompy Public

    Python implementation of the Loom file format - http://loompy.org

    Python 142 37

  2. cytograph2 cytograph2 Public

    Python 14

  3. BoneFight BoneFight Public

    Python 8 1

Repositories

Showing 10 of 49 repositories
  • loom-viewer Public

    Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format

    linnarsson-lab/loom-viewer’s past year of commit activity
    JavaScript 35 BSD-2-Clause 6 44 1 Updated Jan 10, 2025
  • loompy Public

    Python implementation of the Loom file format - http://loompy.org

    linnarsson-lab/loompy’s past year of commit activity
    Python 142 BSD-2-Clause 37 39 2 Updated Dec 16, 2024
  • oligopy Public
    linnarsson-lab/oligopy’s past year of commit activity
    Python 2 2 0 1 Updated Sep 23, 2024
  • fetal_brain_multiomics Public

    Supplementary files and notebooks to recreate figures.

    linnarsson-lab/fetal_brain_multiomics’s past year of commit activity
    HTML 15 BSD-2-Clause 1 0 0 Updated Sep 9, 2024
  • developing-human-brain Public
    linnarsson-lab/developing-human-brain’s past year of commit activity
    Jupyter Notebook 29 BSD-2-Clause 0 12 0 Updated Aug 15, 2024
  • FISHscale Public

    Spatial analysis of FISH data

    linnarsson-lab/FISHscale’s past year of commit activity
    Jupyter Notebook 29 9 5 0 Updated May 31, 2024
  • shoji Public
    linnarsson-lab/shoji’s past year of commit activity
    Jupyter Notebook 6 BSD-2-Clause 0 1 0 Updated May 28, 2024
  • chromograph Public

    Camiel's scATAC-seq analysis pipeline

    linnarsson-lab/chromograph’s past year of commit activity
    Python 10 1 0 0 Updated Apr 15, 2024
  • pysmFISH_auto Public

    Version of the pysmFISH pipeline that run without human in the loop

    linnarsson-lab/pysmFISH_auto’s past year of commit activity
    Jupyter Notebook 6 MIT 4 0 0 Updated Mar 29, 2024
  • cytograph-shoji Public
    linnarsson-lab/cytograph-shoji’s past year of commit activity
    Jupyter Notebook 4 0 1 0 Updated Mar 17, 2024
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