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Update Genrich module input tuple and argument (#3720) #2

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Update Genrich module input tuple and argument (#3720)

Update Genrich module input tuple and argument (#3720) #2

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Job Run time
editorconfig
1s
nf-test-changes
7s
pytest-changes
1s
prettier
1s
nf-test (fastq_download_prefetch_fasterqdump_sratools, docker)
3m 3s
nf-test (fastq_download_prefetch_fasterqdump_sratools, singularity)
3m 1s
nf-test (fastq_download_prefetch_fasterqdump_sratools, conda)
3m 58s
nf-test (nfcorepipelineutils, docker)
1m 43s
nf-test (nfcorepipelineutils, singularity)
1m 44s
nf-test (nfcorepipelineutils, conda)
1m 27s
nf-test (nextflowpipelineutils, docker)
2m 19s
nf-test (nextflowpipelineutils, singularity)
2m 33s
nf-test (nextflowpipelineutils, conda)
2m 25s
nf-test (art/illumina, docker)
2m 3s
nf-test (art/illumina, singularity)
2m 23s
nf-test (art/illumina, conda)
3m 23s
nf-test (hisat2/align, docker)
2m 46s
nf-test (hisat2/align, singularity)
2m 30s
nf-test (hisat2/align, conda)
6m 57s
nf-test (hisat2/build, docker)
2m 14s
nf-test (hisat2/build, singularity)
2m 0s
nf-test (hisat2/build, conda)
2m 57s
nf-test (hisat2/extractsplicesites, docker)
1m 55s
nf-test (hisat2/extractsplicesites, singularity)
2m 12s
nf-test (hisat2/extractsplicesites, conda)
2m 50s
nf-test (snakemake, docker)
2m 21s
nf-test (snakemake, singularity)
2m 30s
nf-test (snakemake, conda)
3m 16s
nf-test (picard/markduplicates, docker)
2m 38s
nf-test (picard/markduplicates, singularity)
3m 37s
nf-test (picard/markduplicates, conda)
5m 10s
nf-test (gunzip, docker)
2m 8s
nf-test (gunzip, singularity)
1m 54s
nf-test (gunzip, conda)
2m 25s
nf-test (sratools/prefetch, docker)
2m 53s
nf-test (sratools/prefetch, singularity)
3m 8s
nf-test (sratools/prefetch, conda)
4m 28s
nf-test (sratools/fasterqdump, docker)
2m 28s
nf-test (sratools/fasterqdump, singularity)
2m 55s
nf-test (sratools/fasterqdump, conda)
5m 13s
nf-test (custom/getchromsizes, docker)
2m 13s
nf-test (custom/getchromsizes, singularity)
2m 18s
nf-test (custom/getchromsizes, conda)
3m 10s
nf-test (custom/dumpsoftwareversions, docker)
1m 54s
nf-test (custom/dumpsoftwareversions, singularity)
3m 18s
nf-test (custom/sratoolsncbisettings, docker)
3m 34s
nf-test (custom/sratoolsncbisettings, singularity)
2m 26s
nf-test (custom/sratoolsncbisettings, conda)
2h 4m 8s
nf-test (fastqscan, docker)
1m 41s
nf-test (fastqscan, singularity)
2m 4s
nf-test (fastqscan, conda)
2m 39s
nf-test (trimgalore, docker)
2m 14s
nf-test (trimgalore, singularity)
2m 21s
nf-test (trimgalore, conda)
3m 18s
nf-test (mlst, docker)
2m 7s
nf-test (mlst, singularity)
2m 56s
nf-test (mlst, conda)
4m 20s
nf-test (fq/lint, docker)
1m 55s
nf-test (fq/lint, singularity)
2m 4s
nf-test (fq/lint, conda)
3m 10s
nf-test (fq/subsample, docker)
2m 15s
nf-test (fq/subsample, singularity)
3m 2s
nf-test (fq/subsample, conda)
3m 18s
nf-test (fq/generate, docker)
1m 49s
nf-test (fq/generate, singularity)
2m 5s
nf-test (fq/generate, conda)
2m 28s
nf-test (samtools/stats, docker)
1m 55s
nf-test (samtools/stats, singularity)
2m 58s
nf-test (samtools/stats, conda)
2m 36s
nf-test (samtools/sort, docker)
1m 47s
nf-test (samtools/sort, singularity)
1m 42s
nf-test (samtools/sort, conda)
3m 29s
nf-test (abricate/run, docker)
2m 19s
nf-test (abricate/run, singularity)
2m 11s
nf-test (abricate/run, conda)
4m 17s
nf-test (abricate/summary, docker)
2m 53s
nf-test (abricate/summary, singularity)
3m 44s
nf-test (abricate/summary, conda)
4m 7s
nf-test (fastqc, docker)
2m 17s
nf-test (fastqc, singularity)
3m 15s
nf-test (fastqc, conda)
3m 0s
nf-test (sourmash/sketch, docker)
1m 51s
nf-test (sourmash/sketch, singularity)
1m 53s
nf-test (sourmash/sketch, conda)
2m 35s
nf-test (fastp, docker)
2m 37s
nf-test (fastp, singularity)
3m 4s
nf-test (fastp, conda)
6m 27s
nf-test (glimpse_chunk, docker)
1m 46s
nf-test (glimpse_chunk, singularity)
2m 3s
nf-test (glimpse_chunk, conda)
2m 16s
nf-test (glimpse_ligate, docker)
2m 1s
nf-test (glimpse_ligate, singularity)
1m 55s
nf-test (glimpse_ligate, conda)
3m 22s
nf-test (fastani, docker)
2m 16s
nf-test (fastani, singularity)
2m 10s
nf-test (fastani, conda)
3m 7s
nf-test (gffread, docker)
1m 41s
nf-test (gffread, singularity)
2m 12s
nf-test (gffread, conda)
2m 14s
nf-test (rasusa, docker)
1m 23s
nf-test (rasusa, singularity)
2m 0s
nf-test (rasusa, conda)
2m 6s
nf-core-lint
0s
pytest
0s
confirm-pass
1s
6h 25m 54s