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Vcf2cytosure (#4312) #3

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Vcf2cytosure (#4312)

Vcf2cytosure (#4312) #3

Run time

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Job Run time
prettier
1s
pytest-changes
1s
nf-test-changes
7s
editorconfig
1s
nf-test (fastqc, docker)
1m 29s
nf-test (fastqc, singularity)
2m 9s
nf-test (fastqc, conda)
1m 56s
nf-test (flye, docker)
44m 34s
nf-test (flye, singularity)
49m 43s
nf-test (flye, conda)
26m 33s
nf-test (bwa/index, docker)
1m 19s
nf-test (bwa/index, singularity)
1m 24s
nf-test (bwa/index, conda)
2m 31s
nf-test (bwa/sampe, docker)
1m 47s
nf-test (bwa/sampe, singularity)
1m 41s
nf-test (bwa/sampe, conda)
2m 34s
nf-test (bwa/aln, docker)
1m 37s
nf-test (bwa/aln, singularity)
1m 27s
nf-test (bwa/aln, conda)
1m 47s
nf-test (bwa/samse, docker)
1m 15s
nf-test (bwa/samse, singularity)
2m 28s
nf-test (bwa/samse, conda)
1m 50s
nf-test (bwa/mem, docker)
1m 43s
nf-test (bwa/mem, singularity)
2m 54s
nf-test (bwa/mem, conda)
4m 4s
nf-test (fq/lint, docker)
1m 55s
nf-test (fq/lint, singularity)
1m 37s
nf-test (fq/lint, conda)
1m 41s
nf-test (fq/subsample, docker)
1m 43s
nf-test (fq/subsample, singularity)
1m 51s
nf-test (fq/subsample, conda)
3m 28s
nf-test (fq/generate, docker)
1m 19s
nf-test (fq/generate, singularity)
1m 18s
nf-test (fq/generate, conda)
2m 19s
nf-test (diamond/makedb, docker)
1m 32s
nf-test (diamond/makedb, singularity)
1m 35s
nf-test (diamond/makedb, conda)
3m 45s
nf-test (diamond/blastx, docker)
1m 29s
nf-test (diamond/blastx, singularity)
1m 30s
nf-test (diamond/blastx, conda)
2m 24s
nf-test (diamond/blastp, docker)
1m 36s
nf-test (diamond/blastp, singularity)
3m 47s
nf-test (diamond/blastp, conda)
2m 29s
nf-test (blast/makeblastdb, docker)
2m 18s
nf-test (blast/makeblastdb, singularity)
3m 54s
nf-test (blast/makeblastdb, conda)
2m 34s
nf-test (blast/tblastn, docker)
1m 35s
nf-test (blast/tblastn, singularity)
4m 44s
nf-test (blast/tblastn, conda)
3m 44s
nf-test (blast/blastn, docker)
1m 44s
nf-test (blast/blastn, singularity)
3m 5s
nf-test (blast/blastn, conda)
3m 50s
nf-test (blast/blastp, docker)
2m 26s
nf-test (blast/blastp, singularity)
1m 55s
nf-test (blast/blastp, conda)
4m 9s
nf-test (fastqscan, docker)
1m 21s
nf-test (fastqscan, singularity)
1m 24s
nf-test (fastqscan, conda)
1m 41s
nf-test (bismark/report, docker)
2m 39s
nf-test (bismark/report, singularity)
2m 56s
nf-test (bismark/report, conda)
3m 50s
nf-test (bismark/methylationextractor, docker)
1m 37s
nf-test (bismark/methylationextractor, singularity)
2m 0s
nf-test (bismark/methylationextractor, conda)
3m 26s
nf-test (bismark/summary, docker)
2m 43s
nf-test (bismark/summary, singularity)
1m 51s
nf-test (bismark/summary, conda)
2m 27s
nf-test (bismark/deduplicate, docker)
1m 14s
nf-test (bismark/deduplicate, singularity)
2m 19s
nf-test (bismark/deduplicate, conda)
2m 56s
nf-test (bismark/coverage2cytosine, docker)
2m 19s
nf-test (bismark/coverage2cytosine, singularity)
1m 55s
nf-test (bismark/coverage2cytosine, conda)
3m 41s
nf-test (bismark/align, docker)
3m 49s
nf-test (bismark/align, singularity)
3m 57s
nf-test (bismark/align, conda)
3m 52s
nf-test (bismark/genomepreparation, docker)
1m 33s
nf-test (bismark/genomepreparation, singularity)
2m 20s
nf-test (bismark/genomepreparation, conda)
3m 13s
nf-test (chopper, docker)
2m 9s
nf-test (chopper, singularity)
1m 29s
nf-test (chopper, conda)
2m 35s
nf-test (abricate/summary, docker)
1m 44s
nf-test (abricate/summary, singularity)
3m 5s
nf-test (abricate/summary, conda)
5m 5s
nf-test (abricate/run, docker)
2m 6s
nf-test (abricate/run, singularity)
2m 35s
nf-test (abricate/run, conda)
2m 56s
nf-test (pycoqc, docker)
1m 36s
nf-test (pycoqc, singularity)
1m 59s
nf-test (pycoqc, conda)
2m 13s
nf-test (fastani, docker)
2m 13s
nf-test (fastani, singularity)
2m 38s
nf-test (fastani, conda)
2m 37s
nf-test (trimmomatic, docker)
2m 39s
nf-test (trimmomatic, singularity)
1m 47s
nf-test (trimmomatic, conda)
5m 17s
nf-test (kallisto/index, docker)
1m 26s
nf-test (kallisto/index, singularity)
2m 29s
nf-test (kallisto/index, conda)
2m 56s
nf-test (kallisto/quant, docker)
1m 42s
nf-test (kallisto/quant, singularity)
2m 14s
nf-test (kallisto/quant, conda)
2m 3s
nf-test (mlst, docker)
2m 10s
nf-test (mlst, singularity)
1m 51s
nf-test (mlst, conda)
2m 53s
nf-test (custom/getchromsizes, docker)
2m 12s
nf-test (custom/getchromsizes, singularity)
1m 25s
nf-test (custom/getchromsizes, conda)
1m 53s
nf-test (custom/dumpsoftwareversions, docker)
1m 52s
nf-test (custom/dumpsoftwareversions, singularity)
1m 39s
nf-test (custom/sratoolsncbisettings, docker)
2m 5s
nf-test (custom/sratoolsncbisettings, singularity)
3m 27s
nf-test (custom/sratoolsncbisettings, conda)
3m 11s
nf-test (assemblyscan, docker)
2m 1s
nf-test (assemblyscan, singularity)
2m 21s
nf-test (assemblyscan, conda)
1m 54s
nf-test (bclconvert, docker)
1m 47s
nf-test (bclconvert, singularity)
1m 57s
nf-test (sratools/fasterqdump, docker)
2m 52s
nf-test (sratools/fasterqdump, singularity)
3m 35s
nf-test (sratools/fasterqdump, conda)
3m 7s
nf-test (sratools/prefetch, docker)
2m 18s
nf-test (sratools/prefetch, singularity)
2m 55s
nf-test (sratools/prefetch, conda)
3m 14s
nf-test (picard/markduplicates, docker)
2m 29s
nf-test (picard/markduplicates, singularity)
2m 16s
nf-test (picard/markduplicates, conda)
2m 42s
nf-test (cat/fastq, docker)
2m 37s
nf-test (cat/fastq, singularity)
1m 52s
nf-test (cat/fastq, conda)
2m 57s
nf-test (cat/cat, docker)
1m 42s
nf-test (cat/cat, singularity)
2m 22s
nf-test (cat/cat, conda)
3m 59s
nf-test (rtgtools/rocplot, docker)
2m 13s
nf-test (rtgtools/rocplot, singularity)
2m 18s
nf-test (rtgtools/rocplot, conda)
3m 6s
nf-test (vardictjava, docker)
3m 54s
nf-test (vardictjava, singularity)
1m 51s
nf-test (vardictjava, conda)
2m 22s
nf-test (samtools/sort, docker)
1m 34s
nf-test (samtools/sort, singularity)
2m 23s
nf-test (samtools/sort, conda)
3m 36s
nf-test (samtools/stats, docker)
4m 8s
nf-test (samtools/stats, singularity)
3m 6s
nf-test (samtools/stats, conda)
3m 34s
nf-test (art/illumina, docker)
1m 59s
nf-test (art/illumina, singularity)
1m 55s
nf-test (art/illumina, conda)
3m 36s
nf-test (dragonflye, docker)
3m 16s
nf-test (dragonflye, singularity)
8m 20s
nf-test (dragonflye, conda)
4m 4s
nf-test (fastp, docker)
3m 13s
nf-test (fastp, singularity)
2m 31s
nf-test (fastp, conda)
4m 14s
nf-test (bcl2fastq, docker)
1m 38s
nf-test (bcl2fastq, singularity)
1m 50s
nf-test (trimgalore, docker)
1m 30s
nf-test (trimgalore, singularity)
2m 27s
nf-test (trimgalore, conda)
2m 25s
nf-test (snakemake, docker)
1m 54s
nf-test (snakemake, singularity)
2m 1s
nf-test (snakemake, conda)
3m 44s
nf-test (gunzip, docker)
1m 20s
nf-test (gunzip, singularity)
1m 53s
nf-test (gunzip, conda)
1m 42s
nf-test (interproscan, docker)
3m 23s
nf-test (interproscan, singularity)
6m 6s
nf-test (interproscan, conda)
3m 56s
nf-test (hisat2/extractsplicesites, docker)
1m 31s
nf-test (hisat2/extractsplicesites, singularity)
2m 32s
nf-test (hisat2/extractsplicesites, conda)
3m 46s
nf-test (hisat2/build, docker)
1m 39s
nf-test (hisat2/build, singularity)
1m 55s
nf-test (hisat2/build, conda)
1m 52s
nf-test (hisat2/align, docker)
2m 57s
nf-test (hisat2/align, singularity)
2m 32s
nf-test (hisat2/align, conda)
2m 57s
nf-test (medaka, docker)
2m 6s
nf-test (medaka, singularity)
3m 4s
nf-test (medaka, conda)
2m 58s
nf-test (ucsc/bedgraphtobigwig, docker)
1m 35s
nf-test (ucsc/bedgraphtobigwig, singularity)
2m 11s
nf-test (ucsc/bedgraphtobigwig, conda)
2m 18s
nf-test (gffread, docker)
1m 24s
nf-test (gffread, singularity)
1m 17s
nf-test (gffread, conda)
2m 38s
nf-test (glimpse/ligate, docker)
2m 4s
nf-test (glimpse/ligate, singularity)
1m 54s
nf-test (glimpse/ligate, conda)
2m 44s
nf-test (glimpse/sample, docker)
1m 49s
nf-test (glimpse/sample, singularity)
1m 39s
nf-test (glimpse/sample, conda)
1m 54s
nf-test (glimpse/phase, docker)
2m 0s
nf-test (glimpse/phase, singularity)
2m 19s
nf-test (glimpse/phase, conda)
5m 20s
nf-test (glimpse/chunk, docker)
3m 0s
nf-test (glimpse/chunk, singularity)
2m 10s
nf-test (glimpse/chunk, conda)
5m 19s
nf-test (glimpse/concordance, docker)
1m 56s
nf-test (glimpse/concordance, singularity)
1m 27s
nf-test (glimpse/concordance, conda)
3m 32s
nf-test (rasusa, docker)
1m 58s
nf-test (rasusa, singularity)
1m 19s
nf-test (rasusa, conda)
2m 43s
nf-test (pigz/uncompress, docker)
2m 14s
nf-test (pigz/uncompress, singularity)
1m 43s
nf-test (pigz/uncompress, conda)
2m 56s
nf-test (sourmash/sketch, docker)
1m 36s
nf-test (sourmash/sketch, singularity)
2m 25s
nf-test (sourmash/sketch, conda)
2m 39s
nf-test (vcf_impute_glimpse, docker)
1m 47s
nf-test (vcf_impute_glimpse, singularity)
2m 13s
nf-test (vcf_impute_glimpse, conda)
4m 7s
nf-test (subworkflows/bam_dedup_stats_samtools_umitools, docker)
1m 23s
nf-test (subworkflows/bam_dedup_stats_samtools_umitools, singularity)
3m 34s
nf-test (subworkflows/bam_dedup_stats_samtools_umitools, conda)
3m 55s
nf-test (fastq_download_prefetch_fasterqdump_sratools, docker)
1m 57s
nf-test (fastq_download_prefetch_fasterqdump_sratools, singularity)
4m 5s
nf-test (fastq_download_prefetch_fasterqdump_sratools, conda)
3m 46s
nf-test (subworkflows/bam_sort_stats_samtools, docker)
1m 18s
nf-test (subworkflows/bam_sort_stats_samtools, singularity)
1m 51s
nf-test (subworkflows/bam_sort_stats_samtools, conda)
2m 42s
nf-test (subworkflows/utils_nextflow_pipeline, docker)
2m 5s
nf-test (subworkflows/utils_nextflow_pipeline, singularity)
2m 53s
nf-test (subworkflows/utils_nextflow_pipeline, conda)
2m 33s
nf-test (subworkflows/utils_nfvalidation_plugin, docker)
2m 9s
nf-test (subworkflows/utils_nfvalidation_plugin, singularity)
1m 33s
nf-test (subworkflows/utils_nfvalidation_plugin, conda)
1m 37s
nf-test (subworkflows/utils_nfcore_pipeline, docker)
1m 35s
nf-test (subworkflows/utils_nfcore_pipeline, singularity)
3m 14s
nf-test (subworkflows/utils_nfcore_pipeline, conda)
1m 43s
pytest
0s
nf-core-lint
0s
confirm-pass
1s
11h 21m 17s