samtools/fasta: remove the extra bracket ( from the version string (#… #9
louperelotest.yml
on: push
nf-test-changes
7s
pytest-changes
9s
Matrix: nf-test
Matrix: nf-core-lint
Matrix: pytest
confirm-pass
0s
Annotations
129 errors and 20 warnings
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nf-test (bcftools/isec, docker)
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nf-test (bcftools/call, singularity)
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nf-test (bcftools/call, docker)
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nf-test (bcftools/mpileup, docker)
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nf-test (bcftools/concat, singularity)
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nf-test (bcftools/concat, docker)
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nf-test (bcftools/isec, conda)
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nf-test (bcftools/mpileup, singularity)
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nf-test (bcftools/concat, conda)
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nf-test (bcftools/mpileup, conda)
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nf-test (bcftools/call, conda)
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nf-test (bcftools/isec, singularity)
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nf-test (bclconvert, docker)
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nf-test (bcftools/view, docker)
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nf-test (bcftools/reheader, docker)
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nf-test (bcftools/view, singularity)
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nf-test (bclconvert, singularity)
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nf-test (bcftools/view, conda)
Process completed with exit code 1.
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nf-test (bcftools/reheader, singularity)
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nf-test (bcftools/reheader, conda)
Process completed with exit code 1.
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nf-test (subworkflows/fastq_fastqc_umitools_fastp, docker)
Process completed with exit code 1.
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nf-test (subworkflows/fastq_fastqc_umitools_fastp, singularity)
Process completed with exit code 1.
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nf-test (subworkflows/fastq_subsample_fq_salmon, docker)
Process completed with exit code 1.
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nf-test (subworkflows/fastq_fastqc_umitools_fastp, conda)
Process completed with exit code 1.
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nf-test (subworkflows/fastq_subsample_fq_salmon, conda)
Process completed with exit code 1.
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nf-test (subworkflows/fastq_subsample_fq_salmon, singularity)
Process completed with exit code 1.
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nf-test (svanalyzer/svbenchmark, docker)
Process completed with exit code 1.
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nf-test (svanalyzer/svbenchmark, singularity)
Process completed with exit code 1.
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pytest (picard/collectmultiplemetrics, singularity)
Process completed with exit code 1.
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pytest (picard/collectmultiplemetrics, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID A880:34D9:1095D87:231485A:656B8454.
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pytest (picard/collectmultiplemetrics, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/collectmultiplemetrics, singularity)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/collectinsertsizemetrics, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID 14B0:644F:3F6CF24:8413929:656B8427.
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pytest (picard/collectinsertsizemetrics, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/collectinsertsizemetrics, singularity)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/collectinsertsizemetrics, singularity)
Process completed with exit code 1.
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pytest (picard/createsequencedictionary, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID 9C40:43C9:4568DE4:914D0CA:656B84AC.
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pytest (picard/createsequencedictionary, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/createsequencedictionary, singularity)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/createsequencedictionary, singularity)
Process completed with exit code 1.
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pytest (picard/collectwgsmetrics, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID A888:1AF4:388965E:760CE89:656B8486.
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pytest (picard/collectwgsmetrics, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/collectwgsmetrics, singularity)
Invalid URL
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pytest (picard/collectwgsmetrics, singularity)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/collectwgsmetrics, singularity)
Process completed with exit code 1.
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pytest (picard/crosscheckfingerprints, docker)
Process completed with exit code 1.
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pytest (picard/crosscheckfingerprints, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID CC80:7BDB:388FE20:7617DE6:656B8507.
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pytest (picard/crosscheckfingerprints, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/crosscheckfingerprints, docker)
Invalid URL
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pytest (picard/crosscheckfingerprints, docker)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/collecthsmetrics, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID 3C13:6A8A:589D388:5BE38A7:656B8424.
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pytest (picard/collecthsmetrics, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/collecthsmetrics, docker)
Invalid URL
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pytest (picard/collecthsmetrics, docker)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/collecthsmetrics, docker)
Process completed with exit code 1.
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pytest (picard/collectrnaseqmetrics, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID 7C00:12C7:D51D34:1C34E55:656B8486.
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pytest (picard/collectrnaseqmetrics, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/collectrnaseqmetrics, docker)
Invalid URL
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pytest (picard/collectrnaseqmetrics, docker)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/collectrnaseqmetrics, docker)
Process completed with exit code 1.
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pytest (picard/collectinsertsizemetrics, conda)
Process completed with exit code 1.
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pytest (picard/collectinsertsizemetrics, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID 9868:9C6E:5556D33:58A7705:656B842F.
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pytest (picard/collectinsertsizemetrics, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/collectinsertsizemetrics, conda)
Invalid URL
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pytest (picard/collectinsertsizemetrics, conda)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/collectrnaseqmetrics, singularity)
Process completed with exit code 1.
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pytest (picard/collectrnaseqmetrics, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID 5400:1503:77C28C4:7B8C054:656B847F.
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pytest (picard/collectrnaseqmetrics, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/collectrnaseqmetrics, singularity)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/collectmultiplemetrics, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID 0C30:0488:47EF90B:963CA3F:656B8477.
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pytest (picard/collectmultiplemetrics, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/collectmultiplemetrics, docker)
Invalid URL
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pytest (picard/collectmultiplemetrics, docker)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/collectmultiplemetrics, docker)
Process completed with exit code 1.
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pytest (picard/createsequencedictionary, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID 8880:2026:46FFEB0:947BC47:656B84C3.
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pytest (picard/createsequencedictionary, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/createsequencedictionary, docker)
Invalid URL
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pytest (picard/createsequencedictionary, docker)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/createsequencedictionary, docker)
Process completed with exit code 1.
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pytest (picard/collectrnaseqmetrics, conda)
Process completed with exit code 1.
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pytest (picard/collectrnaseqmetrics, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID E880:6BDE:FAA562:213CE9E:656B8483.
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pytest (picard/collectrnaseqmetrics, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/collectrnaseqmetrics, conda)
Invalid URL
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pytest (picard/collectrnaseqmetrics, conda)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/fastqtosam, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID 8410:2B05:6CA3E02:7032B9C:656B8508.
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pytest (picard/fastqtosam, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/fastqtosam, conda)
Invalid URL
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pytest (picard/fastqtosam, conda)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/fastqtosam, conda)
Process completed with exit code 1.
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pytest (picard/collectmultiplemetrics, conda)
Process completed with exit code 1.
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pytest (picard/collectmultiplemetrics, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID 1098:4668:10F8EA9:23CF6A6:656B8467.
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pytest (picard/collectmultiplemetrics, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/collectmultiplemetrics, conda)
Invalid URL
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pytest (picard/collectmultiplemetrics, conda)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/collecthsmetrics, singularity)
Process completed with exit code 1.
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pytest (picard/collecthsmetrics, singularity)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID 8C43:603F:5A211AE:5D71BA2:656B8424.
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pytest (picard/collecthsmetrics, singularity)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/collecthsmetrics, singularity)
Invalid URL
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pytest (picard/collecthsmetrics, singularity)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/collectinsertsizemetrics, docker)
Process completed with exit code 1.
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pytest (picard/collectinsertsizemetrics, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID CBC0:9D22:FB5BD2:2150CC7:656B8431.
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pytest (picard/collectinsertsizemetrics, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/collectinsertsizemetrics, docker)
Invalid URL
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pytest (picard/collectinsertsizemetrics, docker)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/createsequencedictionary, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID BBC0:2C6B:3D1209E:7F81565:656B84AD.
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pytest (picard/createsequencedictionary, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/createsequencedictionary, conda)
Invalid URL
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pytest (picard/createsequencedictionary, conda)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/createsequencedictionary, conda)
Process completed with exit code 1.
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pytest (picard/crosscheckfingerprints, conda)
Process completed with exit code 1.
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pytest (picard/crosscheckfingerprints, conda)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID CB00:407E:12FA085:27D4C3A:656B84D2.
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pytest (picard/crosscheckfingerprints, conda)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/crosscheckfingerprints, conda)
Invalid URL
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pytest (picard/crosscheckfingerprints, conda)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/collectwgsmetrics, docker)
Process completed with exit code 1.
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pytest (picard/collectwgsmetrics, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID 0480:9192:3B30F40:7BBA896:656B84B0.
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pytest (picard/collectwgsmetrics, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/collectwgsmetrics, docker)
Invalid URL
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pytest (picard/collectwgsmetrics, docker)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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pytest (picard/fastqtosam, docker)
Process completed with exit code 1.
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pytest (picard/fastqtosam, docker)
Could not retrieve Nextflow release matching .
API rate limit exceeded for installation ID 24730329. If you reach out to GitHub Support for help, please include the request ID 3C40:76EB:1017662:22193DE:656B862D.
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pytest (picard/fastqtosam, docker)
Could not parse the download URL
Cannot read properties of undefined (reading 'filter')
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pytest (picard/fastqtosam, docker)
Invalid URL
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pytest (picard/fastqtosam, docker)
Could not run 'nextflow help'. Error: Unable to locate executable file: nextflow. Please verify either the file path exists or the file can be found within a directory specified by the PATH environment variable. Also check the file mode to verify the file is executable.
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confirm-pass
Process completed with exit code 1.
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pytest (picard/collectmultiplemetrics, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
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pytest (picard/collectinsertsizemetrics, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
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pytest (picard/createsequencedictionary, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
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pytest (picard/collectwgsmetrics, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
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pytest (picard/crosscheckfingerprints, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
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pytest (picard/collecthsmetrics, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
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pytest (picard/collectrnaseqmetrics, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
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pytest (picard/collectinsertsizemetrics, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
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pytest (picard/collectrnaseqmetrics, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
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pytest (picard/collectmultiplemetrics, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
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pytest (picard/createsequencedictionary, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
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pytest (picard/collectrnaseqmetrics, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
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|
pytest (picard/fastqtosam, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
|
pytest (picard/collectmultiplemetrics, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
|
pytest (picard/collecthsmetrics, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
|
pytest (picard/collectinsertsizemetrics, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
|
pytest (picard/createsequencedictionary, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
|
pytest (picard/crosscheckfingerprints, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
|
pytest (picard/collectwgsmetrics, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|
|
pytest (picard/fastqtosam, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
|