Merge pull request #200 from EPFL-ENAC/fix-ci-coverage

Fix CI coverage

.github/workflows/tests.yml

@@ -25,10 +25,6 @@ jobs:
             experimental: false
             coverage: true
 
-          - os: "windows-latest"
-            python-version: "3.11"
-            experimental: false
-
     steps:
       - uses: actions/checkout@v3
 
@@ -47,24 +43,28 @@ jobs:
 
       - name: Test with pytest
         run: |
-          coverage run -m pytest
+          pytest # See pyproject.toml for cov options
 
       - name: Upload coverage reports to Codecov
         uses: codecov/codecov-action@v3
         if: matrix.coverage
-        env:
-          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
-
-      - name: Generate coverage report in LCOV format
-        if: matrix.coverage
-        run: |
-          coverage lcov -o coverage/lcov.info
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          files: coverage.xml
 
       - name: Coveralls Parallel
         uses: coverallsapp/github-action@v2
         if: matrix.coverage
         with:
           parallel: true
+          files: lcov.info
+
+      - name: Upload coverage reports to Codacy
+        uses: codacy/codacy-coverage-reporter-action@v1
+        if: matrix.coverage && github.ref == 'refs/heads/main'
+        with:
+          project-token: ${{ secrets.CODACY_PROJECT_TOKEN }} # Not accessible from PR
+          coverage-reports: coverage.xml
 
   end-coveralls:
     needs: [tests]

.github/workflows/tests_windows.yml

@@ -0,0 +1,37 @@
+name: Tests Windows
+on: [push, pull_request, workflow_dispatch]
+
+jobs:
+  tests:
+    name: Test on ${{ matrix.os }}, Python ${{ matrix.python-version }}${{ matrix.experimental && ' with latest dependencies' || '' }}
+    runs-on: ${{ matrix.os }}
+    defaults:
+      run:
+        shell: bash -el {0}
+
+    strategy:
+      fail-fast: false
+      matrix:
+        os: ["windows-latest"]
+        python-version: ["3.9", "3.10", "3.11"]
+        experimental: [false]
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up micromamba and install package dependencies
+        uses: mamba-org/setup-micromamba@v1
+        with:
+          environment-file: ${{ matrix.experimental && 'ci/environment_latest.yml' || 'ci/environment.yml' }}
+          create-args: >-
+            python=${{ matrix.python-version }}
+          init-shell: >-
+            bash
+
+      - name: Install the package
+        run: |
+          pip install -e .
+
+      - name: Test with pytest
+        run: |
+          coverage run -m pytest

.gitignore

@@ -57,6 +57,7 @@ htmlcov/
 .cache
 nosetests.xml
 coverage.xml
+lcov.info
 *.cover
 *.py,cover
 .hypothesis/

README.md

@@ -5,7 +5,7 @@
 | Deployment           | [![PyPI](https://badge.fury.io/py/disdrodb.svg?style=flat)](https://pypi.org/project/disdrodb/) [![Conda](https://img.shields.io/conda/vn/conda-forge/disdrodb.svg?logo=conda-forge&logoColor=white&style=flat)](https://anaconda.org/conda-forge/disdrodb) |
 | Activity             | [![PyPI Downloads](https://img.shields.io/pypi/dm/disdrodb.svg?label=PyPI%20downloads&style=flat)](https://pypi.org/project/disdrodb/) [![Conda Downloads](https://img.shields.io/conda/dn/conda-forge/disdrodb.svg?label=Conda%20downloads&style=flat)](https://anaconda.org/conda-forge/disdrodb) |
 | Python Versions      | [![Python Versions](https://img.shields.io/badge/Python-3.8%20%203.9%20%203.10%20%203.11%20%203.12-blue?style=flat)](https://www.python.org/downloads/) |
-| Supported Systems    | [![Linux](https://img.shields.io/github/actions/workflow/status/ltelab/disdrodb/.github/workflows/tests.yml?label=Linux&style=flat)](https://github.com/ltelab/disdrodb/actions/workflows/tests.yml) [![macOS](https://img.shields.io/github/actions/workflow/status/ltelab/disdrodb/.github/workflows/tests.yml?label=macOS&style=flat)](https://github.com/ltelab/disdrodb/actions/workflows/tests.yml) [![Windows](https://img.shields.io/github/actions/workflow/status/ltelab/disdrodb/.github/workflows/tests.yml?label=Windows&style=flat)](https://github.com/ltelab/disdrodb/actions/workflows/tests.yml) |
+| Supported Systems    | [![Linux](https://img.shields.io/github/actions/workflow/status/ltelab/disdrodb/.github/workflows/tests.yml?label=Linux&style=flat)](https://github.com/ltelab/disdrodb/actions/workflows/tests.yml) [![macOS](https://img.shields.io/github/actions/workflow/status/ltelab/disdrodb/.github/workflows/tests.yml?label=macOS&style=flat)](https://github.com/ltelab/disdrodb/actions/workflows/tests.yml) [![Windows](https://img.shields.io/github/actions/workflow/status/ltelab/disdrodb/.github/workflows/tests_windows.yml?label=Windows&style=flat)](https://github.com/ltelab/disdrodb/actions/workflows/tests_windows.yml) |
 | Project Status       | [![Project Status](https://www.repostatus.org/badges/latest/active.svg?style=flat)](https://www.repostatus.org/#active) |
 | Build Status         | [![Tests](https://github.com/ltelab/disdrodb/actions/workflows/tests.yml/badge.svg?style=flat)](https://github.com/ltelab/disdrodb/actions/workflows/tests.yml) [![Lint](https://github.com/ltelab/disdrodb/actions/workflows/lint.yml/badge.svg?style=flat)](https://github.com/ltelab/disdrodb/actions/workflows/lint.yml) [![Docs](https://readthedocs.org/projects/disdrodb/badge/?version=latest&style=flat)](https://disdrodb.readthedocs.io/en/latest/) |
 | Linting              | [![Black](https://img.shields.io/badge/code%20style-black-000000.svg?style=flat)](https://github.com/psf/black) [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json&style=flat)](https://github.com/astral-sh/ruff) [![Codespell](https://img.shields.io/badge/Codespell-enabled-brightgreen?style=flat)](https://github.com/codespell-project/codespell) |

pyproject.toml

@@ -77,6 +77,9 @@ disdrodb_upload_station="disdrodb.data_transfer.scripts.disdrodb_upload_station:
 # Metadata archive
 disdrodb_check_metadata_archive="disdrodb.metadata.scripts.disdrodb_check_metadata_archive:disdrodb_check_metadata_archive"
 
+[tool.pytest.ini_options]
+addopts = "--cov --cov-report term-missing --cov-report xml --cov-report lcov:lcov.info"
+
 [tool.ruff]
 select = ["F",
 	  "E",