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2 changes: 1 addition & 1 deletion dev/.documenter-siteinfo.json
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{"documenter":{"julia_version":"1.10.5","generation_timestamp":"2024-09-21T14:04:29","documenter_version":"1.7.0"}}
{"documenter":{"julia_version":"1.10.5","generation_timestamp":"2024-09-23T14:39:48","documenter_version":"1.7.0"}}
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<!DOCTYPE html>
<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Home · PereiraMartinez2024.jl</title><meta name="title" content="Home · PereiraMartinez2024.jl"/><meta property="og:title" content="Home · PereiraMartinez2024.jl"/><meta property="twitter:title" content="Home · PereiraMartinez2024.jl"/><meta name="description" content="Documentation for PereiraMartinez2024.jl."/><meta property="og:description" content="Documentation for PereiraMartinez2024.jl."/><meta property="twitter:description" content="Documentation for PereiraMartinez2024.jl."/><script data-outdated-warner src="assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.16.8/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL="."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="assets/documenter.js"></script><script src="search_index.js"></script><script src="siteinfo.js"></script><script src="../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/catppuccin-mocha.css" data-theme-name="catppuccin-mocha"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/catppuccin-macchiato.css" data-theme-name="catppuccin-macchiato"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/catppuccin-frappe.css" data-theme-name="catppuccin-frappe"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/catppuccin-latte.css" data-theme-name="catppuccin-latte"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="assets/themeswap.js"></script></head><body><div id="documenter"><nav class="docs-sidebar"><a class="docs-logo" href><img src="assets/logo.svg" alt="PereiraMartinez2024.jl logo"/></a><div class="docs-package-name"><span class="docs-autofit"><a href>PereiraMartinez2024.jl</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li class="is-active"><a class="tocitem" href>Home</a></li><li><a class="tocitem" href="proteinA_urea/">BdpA in urea</a></li><li><a class="tocitem" href="rnaset1_urea/">RNase T1 in urea</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Home</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Home</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/m3g/PereiraMartinez2024.jl" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/m3g/PereiraMartinez2024.jl/blob/main/docs/src/index.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="Supplementary-information"><a class="docs-heading-anchor" href="#Supplementary-information">Supplementary information</a><a id="Supplementary-information-1"></a><a class="docs-heading-anchor-permalink" href="#Supplementary-information" title="Permalink"></a></h1><p>A. F. Pereira, L. Martínez, &quot;Cossolvent effects on protein folding landscapes&quot;. </p></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="proteinA_urea/">BdpA in urea »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Saturday 21 September 2024 14:04">Saturday 21 September 2024</span>. 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<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Home · PereiraMartinez2024.jl</title><meta name="title" content="Home · PereiraMartinez2024.jl"/><meta property="og:title" content="Home · PereiraMartinez2024.jl"/><meta property="twitter:title" content="Home · PereiraMartinez2024.jl"/><meta name="description" content="Documentation for PereiraMartinez2024.jl."/><meta property="og:description" content="Documentation for PereiraMartinez2024.jl."/><meta property="twitter:description" content="Documentation for PereiraMartinez2024.jl."/><script data-outdated-warner src="assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.16.8/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL="."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="assets/documenter.js"></script><script src="search_index.js"></script><script src="siteinfo.js"></script><script src="../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/catppuccin-mocha.css" data-theme-name="catppuccin-mocha"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/catppuccin-macchiato.css" data-theme-name="catppuccin-macchiato"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/catppuccin-frappe.css" data-theme-name="catppuccin-frappe"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/catppuccin-latte.css" data-theme-name="catppuccin-latte"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="assets/themeswap.js"></script></head><body><div id="documenter"><nav class="docs-sidebar"><a class="docs-logo" href><img src="assets/logo.svg" alt="PereiraMartinez2024.jl logo"/></a><div class="docs-package-name"><span class="docs-autofit"><a href>PereiraMartinez2024.jl</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li class="is-active"><a class="tocitem" href>Home</a></li><li><a class="tocitem" href="proteinA_urea/">BdpA in urea</a></li><li><a class="tocitem" href="rnaset1_urea/">RNase T1 in urea</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Home</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Home</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/m3g/PereiraMartinez2024.jl" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/m3g/PereiraMartinez2024.jl/blob/main/docs/src/index.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="Supplementary-information"><a class="docs-heading-anchor" href="#Supplementary-information">Supplementary information</a><a id="Supplementary-information-1"></a><a class="docs-heading-anchor-permalink" href="#Supplementary-information" title="Permalink"></a></h1><p>A. F. Pereira, L. Martínez, &quot;Cossolvent effects on protein folding landscapes&quot;. </p></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="proteinA_urea/">BdpA in urea »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Monday 23 September 2024 14:39">Monday 23 September 2024</span>. 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4 changes: 2 additions & 2 deletions dev/pluto_notebooks/proteinA_urea.html
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13 changes: 6 additions & 7 deletions dev/pluto_notebooks/proteinA_urea.jl
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Expand Up @@ -197,7 +197,7 @@ simulated_m₃ = DataFrame(
md"### Simulated preferential interactions:"

# ╔═╡ bb81d137-effe-4107-a61b-fd529cff8421
md"The preferential interaction parameters of BpDA in urea, for the N and U states, are (converted from mol/mol to g/g):"
md"The preferential interaction parameters of BpdA in urea, for the N and U states, are (converted from mol/mol to g/g):"

# ╔═╡ 813427fb-7d88-44f3-b118-2d5b94031a50
∂g₃∂g₂ = DataFrame(
Expand Down Expand Up @@ -316,7 +316,6 @@ Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"
DataFrames = "~1.6.1"
EasyFit = "~0.6.6"
LaTeXStrings = "~1.3.1"
MolSimToolkit = "~1.18.1"
Plots = "~1.40.8"
PlutoUI = "~0.7.60"
Trapz = "~2.0.3"
Expand All @@ -329,7 +328,7 @@ PLUTO_MANIFEST_TOML_CONTENTS = """
julia_version = "1.10.5"
manifest_format = "2.0"
project_hash = "8064f1599bc652ca467eba54f4ff185763673168"
project_hash = "1014976164deca7bb58cee44ab2b2310a841a655"
[[deps.AbstractPlutoDingetjes]]
deps = ["Pkg"]
Expand Down Expand Up @@ -1053,9 +1052,9 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804"
[[deps.MolSimToolkit]]
deps = ["AtomsBase", "CellListMap", "Chemfiles", "DocStringExtensions", "EasyFit", "LaTeXStrings", "LinearAlgebra", "OffsetArrays", "PDBTools", "ProgressMeter", "ProteinSecondaryStructures", "Reexport", "StaticArrays", "Statistics", "StatsBase", "TestItems"]
git-tree-sha1 = "a7f4596be5950f4c1b30a25ee00a8ee19bbf6531"
git-tree-sha1 = "c7072a3552b40f20d20c9bd56e8da0b0b527205d"
uuid = "054db54f-6694-444d-9bbb-e9ecdbfe77be"
version = "1.18.1"
version = "1.19.0"
weakdeps = ["Plots"]
[deps.MolSimToolkit.extensions]
Expand Down Expand Up @@ -1114,9 +1113,9 @@ version = "1.4.3"
[[deps.OpenSSL_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "1b35263570443fdd9e76c76b7062116e2f374ab8"
git-tree-sha1 = "7493f61f55a6cce7325f197443aa80d32554ba10"
uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
version = "3.0.15+0"
version = "3.0.15+1"
[[deps.OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
Expand Down
2 changes: 1 addition & 1 deletion dev/pluto_notebooks/rnaset1_urea.html
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