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@macarthur-lab

MacArthur Lab

Extracting useful information from large genomic datasets

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  1. gene_lists gene_lists Public

    List of gene lists for genomic analyses.

    Python 217 81

  2. clinvar clinvar Public

    This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.

    Python 122 55

  3. igv_utils igv_utils Public

    utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.

    JavaScript 48 11

  4. exac_2015 exac_2015 Public

    Companion repo for ExAC paper, 2015

    R 33 14

  5. gnomad_browser gnomad_browser Public archive

    gnomAD browser pre-ASHG 2018

    JavaScript 33 16

  6. tx_annotation tx_annotation Public

    Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation"

    Python 33 8

Repositories

Showing 10 of 24 repositories
  • gene_lists Public

    List of gene lists for genomic analyses.

    macarthur-lab/gene_lists’s past year of commit activity
    Python 217 81 3 0 Updated Jun 24, 2022
  • tx_annotation Public

    Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation"

    macarthur-lab/tx_annotation’s past year of commit activity
    Python 33 BSD-3-Clause 8 3 0 Updated May 5, 2022
  • gnomad_mnv Public

    Multi-nucleotide variants (MNVs) in gnomAD 2.1

    macarthur-lab/gnomad_mnv’s past year of commit activity
    Jupyter Notebook 11 BSD-3-Clause 7 2 0 Updated Feb 22, 2022
  • gnomad_lrrk2 Public
    macarthur-lab/gnomad_lrrk2’s past year of commit activity
    R 3 BSD-3-Clause 1 0 0 Updated Feb 22, 2022
  • gnomad_browser Public archive

    gnomAD browser pre-ASHG 2018

    macarthur-lab/gnomad_browser’s past year of commit activity
    JavaScript 33 MIT 16 0 0 Updated Nov 2, 2020
  • clinvar Public

    This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.

    macarthur-lab/clinvar’s past year of commit activity
    Python 122 55 6 (1 issue needs help) 2 Updated Feb 13, 2020
  • MyoSeq_reports Public

    Creates research-only pdf reports for MyoSeq group

    macarthur-lab/MyoSeq_reports’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 13, 2020
  • cromwell_intro Public

    Dockerfile and wdl script for a simple cromwell / firecloud workflow

    macarthur-lab/cromwell_intro’s past year of commit activity
    WDL 0 MIT 1 0 0 Updated Sep 3, 2019
  • gnomad-docs Public
    macarthur-lab/gnomad-docs’s past year of commit activity
    0 0 0 0 Updated Jul 29, 2019
  • igv_utils Public

    utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.

    macarthur-lab/igv_utils’s past year of commit activity
    JavaScript 48 11 7 1 Updated May 7, 2019
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