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Consolidated feature #3

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Consolidated feature #3

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Commits on Jun 7, 2022

  1. Added bufferedWriter utility

    @tcasstevens
    tcasstevens committed Jun 7, 2022
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  2. Importing Brandon/Zach's code from Jupyter to adapt the writeBedFile 

    function
    @Gingerroot775
    Gingerroot775 committed Jun 7, 2022
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  3. Initial pass of adapting it to make GFF

    @Gingerroot775
    Gingerroot775 committed Jun 7, 2022
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Commits on Jun 8, 2022

  1. Moved MakeGffForNewSpecies to gff package

    @tcasstevens
    tcasstevens committed Jun 8, 2022
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  2. Comitting day 2 of hackathon work

    @Gingerroot775
    Gingerroot775 committed Jun 8, 2022
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  3. Merge branch 'feature/makeGFFForNewSpecies' of https://bitbucket.org/… 

    …bucklerlab/biokotlin into feature/makeGFFForNewSpecies
    @Gingerroot775
    Gingerroot775 committed Jun 8, 2022
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Commits on Jun 9, 2022

  1. Adding initial GFF Feature data structures

    @tcasstevens
    tcasstevens committed Jun 9, 2022
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  2. Adding initial GFF Feature data structures

    @tcasstevens
    tcasstevens committed Jun 9, 2022
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  3. Adding initial GFF Feature data structures

    @tcasstevens
    tcasstevens committed Jun 9, 2022
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Commits on Jun 10, 2022

  1. Adding initial GFF Feature data structures

    @tcasstevens
    tcasstevens committed Jun 10, 2022
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  2. First draft of parser

    @Gingerroot775
    Gingerroot775 committed Jun 10, 2022
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  3. Added convenience method for converting from string to feature type

    @Gingerroot775
    Gingerroot775 committed Jun 10, 2022
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  4. Adding initial GFF Feature data structures

    @tcasstevens
    tcasstevens committed Jun 10, 2022
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  5. Merge branch 'feature/makeGFFForNewSpecies' of https://bitbucket.org/… 

    …bucklerlab/biokotlin into feature/makeGFFForNewSpecies
    @Gingerroot775
    Gingerroot775 committed Jun 10, 2022
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  6. Added toString and lazyEquals methods

    @Gingerroot775
    Gingerroot775 committed Jun 10, 2022
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  7. Added GFF parser, tested to see if it works with scrambled orders (it 

    does but my test is messy)
    @Gingerroot775
    Gingerroot775 committed Jun 10, 2022
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  8. Corrected bug in Feature toString

    @Gingerroot775
    Gingerroot775 committed Jun 10, 2022
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  9. Made parser sort for seqid instead of just start

    @Gingerroot775
    Gingerroot775 committed Jun 10, 2022
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Commits on Jun 15, 2022

  1. Merged develop into feature/makeGFFForNewSpecies

    @tcasstevens
    tcasstevens committed Jun 15, 2022
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Commits on Jun 16, 2022

  1. Merged develop into feature/makeGFFForNewSpecies

    @tcasstevens
    tcasstevens committed Jun 16, 2022
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Commits on Jun 17, 2022

  1. Committing prior to branching to reduce the number of clases in the 

    Feature framework
    @Gingerroot775
    Gingerroot775 committed Jun 17, 2022
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Commits on Jun 23, 2022

  1. First draft of unified Feature/FeatureTree framework

    @Gingerroot775
    Gingerroot775 committed Jun 23, 2022
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Commits on Jun 24, 2022

  1. Changes prior to meeting with Ed, where we decided to go a different 

    direction
    @Gingerroot775
    Gingerroot775 committed Jun 24, 2022
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