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updated mapping for HP:0000268
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updated mapping for HP:0000268
updated mapping dates for terms revised today and Friday
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@sbello
sbello committed Jul 31, 2023
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Showing 1 changed file with 11 additions and 11 deletions.
22 changes: 11 additions & 11 deletions mappings/mp_hp_mgi_all.sssom.tsv
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Expand Up @@ -66,7 +66,7 @@ HP:0000238 Hydrocephalus skos:narrowMatch 0.7 MP:0001891 hydrocephaly semapv:Man
HP:0000243 Trigonocephaly skos:exactMatch 1 MP:0030368 trigonocephaly semapv:ManualMappingCuration orcid:0000-0002-6490-7723 2022-08-10 KidsFirst
HP:0000252 Microcephaly skos:narrowMatch 0.8 MP:0000433 microcephaly semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2021-05-27 KidsFirst; MP specifies size not circumference and does not specify how much smaller
HP:0000256 Macrocephaly skos:narrowMatch 0.9 MP:0000434 megacephaly semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2021-05-27 KidsFirst; MP term just specifies abnormally large size of the head not as specific as the HPO term
HP:0000268 Dolichocephaly skos:exactMatch 0.9 MP:0003742 narrow head semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2022-02-11 KidsFirst; while the MP term only refers to narrow, dolichocephaly is an exact synonym, uncertainty due to the lack of mention of increase in height
HP:0000268 Dolichocephaly skos:closeMatch 0.9 MP:0003742 narrow head semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2023-07-31 KidsFirst; while the MP term only refers to narrow, dolichocephaly is an exact synonym, uncertainty due to the lack of mention of increase in height
HP:0000271 Abnormality of the face skos:broadMatch 0.9 MP:0003743 abnormal facial morphology semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2021-05-27 KidsFirst; I think the HPO term is broader as it has children like rhinitis which we would not put under facial morphology
HP:0000286 Epicanthus skos:broadMatch 1 MP:0006168 epicanthus inversus semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2022-01-25 KidsFirst; consider adding a new term for this that would be a parent to existing term
HP:0000316 Hypertelorism skos:closeMatch 0.9 MP:0001300 ocular hypertelorism semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2021-05-27 KidsFirst; MP term does not include the "2 SD" requirement but would be an exact match to the "alternate" definition
Expand Down Expand Up @@ -177,7 +177,7 @@ HP:0001269 Hemiparesis skos:exactMatch 1 MP:0031201 hemiparesis semapv:ManualMap
HP:0001272 Cerebellar atrophy skos:closeMatch 1 MP:0014185 cerebellum atrophy semapv:ManualMappingCuration orcid:0000-0003-2307-1226 2021-07-29 Alzheimer
HP:0001276 Hypertonia skos:relatedMatch 1 MP:0012052 hypertonicity semapv:ManualMappingCuration orcid:0000-0003-2307-1226 2021-07-29 Alzheimer
HP:0001279 Syncope skos:exactMatch 1 MP:0031302 syncope semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID https://www.medrxiv.org/content/10.1101/2020.12.30.20249060v1
HP:0001284 Areflexia skos:broadMatch 1 MP:0031122 areflexia semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32464367
HP:0001284 Areflexia skos:broadMatch 1 MP:0031122 areflexia semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2023-07-28 COVID PMID:32464367
HP:0001287 Meningitis skos:exactMatch 1 MP:0031110 meningitis semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32464367
HP:0001288 Gait disturbance skos:exactMatch 1 MP:0001406 abnormal gait semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2022-07-28 scoliosis, Alzheimer
HP:0001290 Generalized hypotonia skos:narrowMatch 1 MP:0004144 hypotonia semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2022-01-27 KidsFirst; MP broad based on lack of "generalized" specification
Expand Down Expand Up @@ -253,8 +253,8 @@ HP:0001829 Foot polydactyly skos:narrowMatch 1 MP:0000562 polydactyly semapv:Man
HP:0001832 Abnormal metatarsal morphology skos:exactMatch 1 MP:0003072 abnormal metatarsal bone morphology semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2022-07-28 scoliosis
HP:0001840 Metatarsus adductus skos:narrowMatch 1 MP:0003072 abnormal metatarsal bone morphology semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2022-01-25 KidsFirst; consider adding new child, at least a general rotation term
HP:0001873 Thrombocytopenia skos:exactMatch 1 MP:0003179 thrombocytopenia semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32178975, PMID:32311826
HP:0001882 Leukopenia skos:narrowMatch 1 MP:0000221 decreased leukocyte cell number semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:31986264
HP:0001888 Lymphopenia skos:narrowMatch 1 MP:0005016 decreased lymphocyte cell number semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32007143, PMID:31986264, PMID:32311826
HP:0001882 Leukopenia skos:narrowMatch 1 MP:0000221 decreased leukocyte cell number semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2023-07-28 COVID PMID:31986264
HP:0001888 Lymphopenia skos:narrowMatch 1 MP:0005016 decreased lymphocyte cell number semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2023-07-28 COVID PMID:32007143, PMID:31986264, PMID:32311826
HP:0001902 Giant platelets skos:exactMatch 0.9 MP:0030025 giant platelets semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2022-08-10 KidsFirst; MP term matches the second part of the HPO definition "as large as or larger than the red blood cells"
HP:0001907 Thromboembolism skos:relatedMatch 1 MP:0031158 abnormal venous thrombosis semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID https://doi.org/10.1038/s41569-020-0413-9
HP:0001928 Abnormality of coagulation skos:exactMatch 1 MP:0002551 abnormal blood coagulation semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID; MP related synonym = coagulopathy PMID:32508062, PMID:32415579, PMID:32467443, PMID:32073213
Expand All @@ -263,9 +263,9 @@ HP:0001941 Acidosis skos:exactMatch 1 MP:0003031 acidosis semapv:ManualMappingCu
HP:0001942 Metabolic acidosis skos:exactMatch 1 MP:0012551 metabolic acidosis semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32574318
HP:0001943 Hypoglycemia skos:closeMatch 1 MP:0005560 decreased circulating glucose level semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2022-01-27 KidsFirst; the MP also has a term for hypoglycemia (child of decreased circulating glucose level) but states that this generally refers to the pathological state. Since the HPO terms is defined just as "A decreased concentration of glucose in the blood." I think the circulating term is a better match
HP:0001945 Fever skos:broadMatch 1 MP:0005533 increased body temperature semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID; MP term narrow synonym = hyperpyrexia PMID:32574165
HP:0001974 Leukocytosis skos:narrowMatch 1 MP:0000218 increased leukocyte cell number semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32209890, PMID:32007143, PMID:32311826
HP:0001974 Leukocytosis skos:narrowMatch 1 MP:0000218 increased leukocyte cell number semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2023-07-28 COVID PMID:32209890, PMID:32007143, PMID:32311826
HP:0001977 Abnormal thrombosis skos:exactMatch 1 MP:0005048 abnormal thrombosis semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32508062, PMID:32415579, PMID:32467443
HP:0001999 Abnormal facial shape skos:broadMatch 1 MP:0030071 abnormal face shape semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2021-05-27 KidsFirst
HP:0001999 Abnormal facial shape skos:broadMatch 1 MP:0030071 abnormal face shape semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2023-07-28 KidsFirst
HP:0002013 Vomiting skos:exactMatch 1 MP:0003260 vomiting semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32574165, PMID:32222988, PMID:32620220
HP:0002014 Diarrhea skos:exactMatch 1 MP:0005036 diarrhea semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32574165, PMID:32222988, PMID:32620220
HP:0002015 Dysphagia skos:exactMatch 1 MP:0003158 dysphagia semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32460415
Expand Down Expand Up @@ -514,7 +514,7 @@ HP:0011590 Double aortic arch skos:exactMatch 1 MP:0004159 double aortic arch se
HP:0011611 Interrupted aortic arch skos:exactMatch 1 MP:0004157 interrupted aortic arch semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2022-02-02 KidsFirst
HP:0011620 Abnormality of abdominal situs skos:exactMatch 1 MP:0031284 abdominal situs abnormality semapv:ManualMappingCuration orcid:0000-0002-6490-7723|orcid:0000-0003-4606-0597 2021-05-27 KidsFirst; MP has MP:0011250 and MP:0011249 but not the parent grouping term
HP:0011623 Muscular ventricular septal defect skos:exactMatch 1 MP:0010420 muscular ventricular septal defect semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2022-01-25 KidsFirst
HP:0011675 Arrhythmia skos:broadMatch 1 MP:0001636 irregular heartbeat semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32354800, PMID:32620220, https://doi.org/10.1101/2020.10.09.20209379
HP:0011675 Arrhythmia skos:broadMatch 1 MP:0001636 irregular heartbeat semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2023-07-28 COVID PMID:32354800, PMID:32620220, https://doi.org/10.1101/2020.10.09.20209379
HP:0011821 Abnormality of facial skeleton skos:exactMatch 1 MP:0005274 abnormal viscerocranium morphology semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2021-05-27 KidsFirst
HP:0011842 Abnormal skeletal morphology skos:broadMatch 1 MP:0002113 abnormal skeleton development semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2022-07-29 scoliosis
HP:0011842 Abnormal skeletal morphology skos:exactMatch 1 MP:0005508 abnormal skeleton morphology semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2022-07-29 scoliosis
Expand Down Expand Up @@ -549,8 +549,8 @@ HP:0012375 Chemosis skos:exactMatch 1 MP:0031097 conjunctival chemosis semapv:Ma
HP:0012378 Fatigue skos:exactMatch 1 MP:0002899 fatigue semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32574165
HP:0012384 Rhinitis skos:exactMatch 1 MP:0001867 rhinitis semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32451564
HP:0012387 Bronchitis skos:exactMatch 1 MP:0031055 bronchitis semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32493030, PMID:32682491, PMID:32879413
HP:0012416 Hypercapnia skos:narrowMatch 1 MP:0002318 hypercapnia semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32203672
HP:0012417 Hypocapnia skos:narrowMatch 1 MP:0003032 hypocapnia semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32344310
HP:0012416 Hypercapnia skos:narrowMatch 1 MP:0002318 hypercapnia semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2023-07-28 COVID PMID:32203672
HP:0012417 Hypocapnia skos:narrowMatch 1 MP:0003032 hypocapnia semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2023-07-28 COVID PMID:32344310
HP:0012418 Hypoxemia skos:relatedMatch 1 MP:0005039 hypoxia semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32376101, PMID:32319424
HP:0012418 Hypoxemia skos:exactMatch 1 MP:0012549 hypoxemia semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID; HP term related synonym = Hypoxia PMID:32376101
HP:0012418 Hypoxemia skos:relatedMatch 1 MP:0031068 decreased blood oxygen saturation level semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32653160
Expand Down Expand Up @@ -630,7 +630,7 @@ HP:0031805 Intraretinal hemorrhage skos:narrowMatch 1 MP:0006185 retina hemorrha
HP:0031826 Abnormal reflex skos:exactMatch 1 MP:0001961 abnormal reflex semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32464367
HP:0031831 Decreased serum zinc skos:closeMatch 1 MP:0031172 decreased circulating zinc level semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID; HP term definition specifies "blood" not "serum" https://doi.org/10.1101/2020.10.07.20208645
HP:0031851 Reduced hematocrit skos:exactMatch 1 MP:0000208 decreased hematocrit semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32566620
HP:0031891 Decreased eosinophil count skos:narrowMatch 1 MP:0005012 decreased eosinophil cell number semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32368728, PMID:32562554
HP:0031891 Decreased eosinophil count skos:narrowMatch 1 MP:0005012 decreased eosinophil cell number semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2023-07-28 COVID PMID:32368728, PMID:32562554
HP:0031956 Elevated circulating aspartate aminotransferase concentration skos:exactMatch 1 MP:0005343 increased circulating aspartate transaminase level semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32007143, PMID:32145190, PMID:32311826
HP:0031964 Elevated circulating alanine aminotransferase concentration skos:exactMatch 1 MP:0002941 increased circulating alanine transaminase level semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32007143, PMID:32145190
HP:0031965 Increased RBC distribution width skos:exactMatch 1 MP:0010067 increased red blood cell distribution width semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32566620, PMID:32509258
Expand Down Expand Up @@ -667,7 +667,7 @@ HP:0040186 Maculopapular exanthema skos:broadMatch 1 MP:0031103 skin rash semapv
HP:0040218 Reduced natural killer cell count skos:exactMatch 1 MP:0008045 decreased NK cell number semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32505227
HP:0040223 Pulmonary hemorrhage skos:exactMatch 1 MP:0001182 lung hemorrhage semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:34433686, PMID:34479651, PMID:33481385
HP:0040246 Reduced antithrombin antigen skos:exactMatch 1 MP:0012325 decreased circulating antithrombin level semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32311826
HP:0040303 Decreased serum iron skos:closeMatch 1 MP:0004151 decreased circulating iron level semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID; in this case serum iron would be a child of blood iron, HPO definition specifies "serum" PMID:32509258
HP:0040303 Decreased serum iron skos:closeMatch 1 MP:0004151 decreased circulating iron level semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2023-07-28 COVID; in this case serum iron would be a child of blood iron, HPO definition specifies "serum" PMID:32509258
HP:0041051 Ageusia skos:exactMatch 1 MP:0031090 ageusia semapv:ManualMappingCuration orcid:0000-0003-4606-0597|orcid:0000-0002-6490-7723 2021-12-31 COVID PMID:32464367, PMID:32383370
HP:0041079 Decreased body fat percentage skos:relatedMatch 0.9 MP:0014143 decreased body fat mass semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2022-07-29 scoliosis
HP:0045005 Neural tube defect skos:narrowMatch 1 MP:0003720 abnormal neural tube closure semapv:ManualMappingCuration orcid:0000-0003-4606-0597 2022-01-26 KidsFirst; note neural tube defects is a synonym of abnormal neural tube morphology in the MP but the HPO term specfies a defect in closure; the MP term specifies "any anomaly" in closure and could thus cover premature closure while the HPO term specifies "fails to close". In practice the child terms of the MP term all relate to failure or delay of closure
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