- Add: TestWrite.test_missing_entries()

mapping-commons · May 20, 2024 · d9dd14f · d9dd14f
1 parent 91d08b8
commit d9dd14f
Showing 1 changed file with 35 additions and 0 deletions.
diff --git a/tests/test_writers.py b/tests/test_writers.py
@@ -191,3 +191,38 @@ def test_write_sssom_ontoportal_json(self):
             self.mapping_count,
             f"{path} has the wrong number of mappings.",
         )
+
+    def test_missing_entries(self):
+        """Test to make sure that missing entires do not appear"""
+        metadata = {
+            'creator_id': 'orcid:0000-0002-2906-7319',
+            'curie_map': {
+                'MONDO': 'http://purl.obolibrary.org/obo/MONDO_',
+                'Orphanet': 'http://www.orpha.net/ORDO/Orphanet_',
+                'icd11.foundation': 'http://id.who.int/icd/entity/',
+                'oboInOwl': 'http://www.geneontology.org/formats/oboInOwl#',
+                'orcid': 'https://orcid.org/',
+                'owl': 'http://www.w3.org/2002/07/owl#',
+                'rdf': 'http://www.w3.org/1999/02/22-rdf-syntax-ns#',
+                'rdfs': 'http://www.w3.org/2000/01/rdf-schema#',
+                'semapv': 'https://w3id.org/semapv/',
+                'skos': 'http://www.w3.org/2004/02/skos/core#',
+                'sssom': 'https://w3id.org/sssom/'
+            },
+            'license': 'http://w3id.org/sssom/license/unspecified',
+            'mapping_provider': 'https://www.orpha.net/'
+        }
+        import curies  # TODO: put this at the top
+        converter = curies.Converter.from_prefix_map(metadata['curie_map'])
+        df = pd.DataFrame([{
+            'subject_id': 'Orphanet:58',
+            'subject_label': 'Alexander disease',
+            'predicate_id': 'skos:exactMatch',
+            'object_id': 'icd11.foundation:2023359698',
+            'object_label': 'Alexander disease',
+            'mapping_justification': 'semapv:UnspecifiedMatching'
+        }])
+        msdf: MappingSetDataFrame = MappingSetDataFrame(converter=converter, df=df, metadata=metadata)
+        # TODO: real outpath
+        with open('/Users/joeflack4/Desktop/temp.tsv', 'w') as f:
+            write_table(msdf, f)