Toy pipelines for prototyping and testing platforms and functionalities:
- toy-cowsay-nf: Toy pipeline for simple Nextflow tests
- toy-shpc-nf: Toy RNAseq pipeline, to test interplay of Nextflow with SHPC container modules
- toy-acacia-nf: Toy pipeline to test Nextflow with Acacia (S3 Object Storage) at Pawsey
- toy-gpu-nf: Toy pipeline to test Nextflow with Nvidia GPUs on Topaz at Pawsey
- toy-quantum-qb-nf: Toy pipeline to run Quantum Computing simulations using Qristal by Quantum Brilliance
Analysis pipelines for the life sciences:
- eDNAFlow: Pipeline for analysis of environmental DNA, led by Mahsa Mousavi (Scientific paper)
- trinity-nf: Trinity assembly pipeline for BioCommons, ported from USydney Informatics Hub (WorkflowHub entry)
- nanopore-nf: Nanopore pipeline for DPIRD
- illumina-nf: Illumina pipeline for DPIRD
Major contributions to the Nextflow codebase (Pawsey days, 2019-2023):