Update vermouth/dssp/dssp.py

Co-authored-by: Peter C Kroon <[email protected]>
marrink-lab · Dec 2, 2022 · 4e093f3 · 4e093f3
1 parent 8ad21bb
commit 4e093f3
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/vermouth/dssp/dssp.py b/vermouth/dssp/dssp.py
@@ -196,7 +196,7 @@ def run_dssp(system, executable='dssp', savefile=None, defer_writing=True, versi
     # check version
     process = subprocess.run(["dssp", "--version"], stdout=subprocess.PIPE, stderr=subprocess.PIPE)
     version_found = process.stdout.decode('UTF8')
-    if version not in stdout_UTF8:
+    if version not in version_found:
         raise DSSPError('Vermouth currently only supports DSSP version 3.0.0.')
 
     tmpfile_handle, tmpfile_name = tempfile.mkstemp(suffix='.pdb', text=True,