Update Dockerfile #7

	name: CI
	on: [push, pull_request, workflow_dispatch]

	jobs:
	test:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3

	- name: Build the Docker container
	run: docker build -t unmicst:test .

	# Cache test data to avoid repeated download
	- uses: actions/cache@v3
	id: cache-data
	with:
	path: \|
	~/data/exemplar-001-cycle6.ome.tif
	key: testdata-2022-04-29

	# Download test data only if no cache is present
	- name: Test data download
	if: steps.cache-data.outputs.cache-hit != 'true'
	run: \|
	mkdir ~/data
	cd ~/data
	curl -f -o exemplar-001-cycle6.ome.tif https://mcmicro.s3.amazonaws.com/ci/exemplar-001-cycle6.ome.tif

	- name: Test the container
	run: \|
	cd ~/data
	rm -f exemplar-001-cycle6_Probabilities_1.tif
	rm -rf qc/
	docker run -v "$PWD":/data unmicst:test /bin/bash -c "cd /data; \
	python /app/unmicstWrapper.py --stackOutput --outputPath . exemplar-001-cycle6.ome.tif"

	# If the action is successful, the output will be available as a downloadable artifact
	- name: Upload processed result
	uses: actions/upload-artifact@v2
	with:
	name: exemplar-001
	path: \|
	~/data/exemplar-001-cycle6_Probabilities_1.tif
	~/data/qc/**

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