update

mc2-center · Mar 4, 2024 · a6df3db · a6df3db
1 parent 7236309
commit a6df3db
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Showing 2 changed files with 2 additions and 4 deletions.
diff --git a/conf/dynamic.config b/conf/dynamic.config
@@ -64,7 +64,7 @@ params {
     // Process-specific resource requirements
     withName: HISTOQC {
       cpus   = { check_max( 2     * slow(task.attempt),         'cpus'   ) }
-      memory = { check_max((${meta.memory}.toFloat() * task.attempt) + 'GB', 'memory') }
+      memory =  { check_max("${meta.memory * task.attempt}GB", 'memory' ) }
       time   = { check_max( 24.h  * task.attempt,               'time'   ) }
     }
 

diff --git a/subworkflows/samplesheet_split.nf b/subworkflows/samplesheet_split.nf
@@ -32,8 +32,6 @@ workflow SPLIT {
 
 // Adjusted function to directly take fileSizeBytes
 def calculateMemoryAllocation(double fileSizeBytes) {
-    // Placeholder for your memory calculation logic
-    // This example directly uses fileSizeGB
     def memoryGB = Math.ceil(Math.exp((0.497 * Math.log(fileSizeBytes) - 8.74)) + (2 * 0.39))
-    return memoryGB < 2 ? 2 : memoryGB  // Ensuring a minimum of 6 GB
+    return memoryGB < 2 ? 2 : memoryGB  // Ensuring a minimum of 2 GB
 }