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Fix built in config #34

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Fix built in config #34

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d522dff
add projectDir to empty file
adamjtaylor Apr 3, 2024
47d2d47
Move empty.txt to bin dir
adamjtaylor Apr 3, 2024
facf6d9
Specify empty.txt loc in projectDir
adamjtaylor Apr 3, 2024
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0 assets/empty.txt → bin/empty.txt
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2 changes: 1 addition & 1 deletion subworkflows/run_histoqc.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ workflow RUN {
main:

// If a custom config is passed use it, otherwise pass a dummy file
def custom_config = params.custom_config ? Channel.fromPath(params.custom_config).first() : Channel.fromPath("assets/empty.txt").first() // need to pass a dummy file in the projectDir or similar
def custom_config = params.custom_config ? Channel.fromPath(params.custom_config).first() : Channel.fromPath("${workflow.projectDir}/bin/empty.txt").first() // need to pass a dummy file in the projectDir or similar

// Scenario 1: Conversion
if (params.convert ) {
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