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Update docs/reconstruction-guide.md
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Co-authored-by: Ziwen Liu <[email protected]>
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talonchandler and ziw-liu authored Aug 31, 2023
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`recOrder` is compatible with OME-Zarr, a chunked next generation file format with an [open specification](https://ngff.openmicroscopy.org/0.4/). All acquisitions completed with the `recOrder` plugin will be automatically converted to `.zarr` format, and existing data can be converted using `iohub`'s `convert` utility.

Inside a `recOrder` environment, convert a Micro-Manager TIFF sequence, OME-TIFF, or pycromanager NDTiff datasets with
Inside a `recOrder` environment, convert a Micro-Manager TIFF sequence, OME-TIFF, or pycromanager NDTiff dataset with
```
iohub convert `
-i ./dataset/ `
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