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Merge alg-dev into main ahead of release #171

Merged
merged 3 commits into from
Jul 5, 2024
Merged

Merge alg-dev into main ahead of release #171

merged 3 commits into from
Jul 5, 2024

Commits on Apr 23, 2024

  1. Phase reconstruction is invariant to voxel-size (#164)

    * fix bug finding focus in stack with only one slice
    
    * refactor for clarify
    
    * formatting
    
    * print -> warnings.warn
    
    * test single-slice case
    
    * fix test bugs
    
    * z-scale-invariant test object
    
    * no rescaling on output
    
    * forward simulation takes a "brightness" - simulating real microscope
    
    * fix example script
    
    * add background parameter for fluorescence forward model
    
    * test voxel-size invariance
    
    * rename I_norm -> direct_intensity
    
    * refactor to clarify discretization factor
    
    * remove comment
    
    * fix fluorescence example bug
    
    * improved docsring
    
    ---------
    
    Co-authored-by: Ivan Ivanov <[email protected]>
    talonchandler and ieivanov authored Apr 23, 2024
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Commits on Jul 3, 2024

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Commits on Jul 5, 2024

  1. np.product -> np.prod

    talonchandler committed Jul 5, 2024
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