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prodigal to pyrodigal#2306

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meren wants to merge 17 commits intomastermerenlab/anvio:masterfrom prodigal-to-pyrodigalmerenlab/anvio:prodigal-to-pyrodigalCopy head branch name to clipboard

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Commits on Jul 11, 2024

• a template for pyrodigal running class

  meren

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  7c9ddc0

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• Pyrodigal is among the gene callers

  meren

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• the gene calling uses pyrodigal by default

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• unused library

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• more structure

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• Update pyrodigal.py

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• make sure pyrodigal is installed

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• requirements += pyrodigal

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Commits on Jul 12, 2024

• better structure with single/meta option

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• cosmetics

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• new community param for full gene calling report

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• += --ful-gene-calling-report

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• enable full gene calling report when requested

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• update docs

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Commits on Aug 29, 2024

• Merge branch 'master' into prodigal-to-pyrodigal

  Ge0rges

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Commits on Sep 20, 2024

• pyrodigal-gv update in the codebase

  FlorianTrigodet

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Commits on Sep 24, 2024

• Removing ancient functions

  FlorianTrigodet

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