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  1. GraphBin GraphBin Public

    ✨🧬 Refined binning of metagenomic contigs using assembly graphs

    Python 89 7

  2. MetaCoAG MetaCoAG Public

    🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

    Python 59 5

  3. GraphBin2 GraphBin2 Public

    ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

    Python 33 3

  4. VStrains VStrains Public

    VStrains is a de novo approach for reconstructing strains from viral quasispecies.

    Python 16 6

  5. metagenomic_binning_review metagenomic_binning_review Public

    Code used to analyse and plot metadata of metagenomic binning tools

    Jupyter Notebook 9 1

  6. gbintk gbintk Public

    🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit

    Python 8 5

Repositories

Showing 8 of 8 repositories
  • gbintk Public

    🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit

    metagentools/gbintk’s past year of commit activity
    Python 8 GPL-3.0 5 0 0 Updated Oct 2, 2024
  • MetaCoAG Public

    🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

    metagentools/MetaCoAG’s past year of commit activity
    Python 59 GPL-3.0 5 10 0 Updated Sep 26, 2024
  • GraphBin2 Public

    ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

    metagentools/GraphBin2’s past year of commit activity
    Python 33 BSD-3-Clause 3 7 0 Updated Sep 26, 2024
  • metagenomic_binning_review Public

    Code used to analyse and plot metadata of metagenomic binning tools

    metagentools/metagenomic_binning_review’s past year of commit activity
    Jupyter Notebook 9 MIT 1 0 0 Updated Aug 22, 2024
  • GraphBin Public

    ✨🧬 Refined binning of metagenomic contigs using assembly graphs

    metagentools/GraphBin’s past year of commit activity
    Python 89 BSD-3-Clause 7 5 0 Updated Aug 19, 2024
  • ConDiGA Public

    🗂️🧬 Contigs directed gene annotation for accurate protein sequence database construction in metaproteomics

    metagentools/ConDiGA’s past year of commit activity
    Python 4 MIT 1 0 0 Updated Jul 7, 2024
  • metagenomic-database-utilities Public

    Scripts used to create metagenomic databases for metaproteomic analysis

    metagentools/metagenomic-database-utilities’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Feb 6, 2024
  • VStrains Public

    VStrains is a de novo approach for reconstructing strains from viral quasispecies.

    metagentools/VStrains’s past year of commit activity
    Python 16 MIT 6 0 0 Updated Feb 9, 2023

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