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working on #3951
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fixing parentage in amino acid and amino acid derivative branches
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@sbello
sbello committed Aug 8, 2024
1 parent 43c52b8 commit 489f770
Showing 1 changed file with 10 additions and 7 deletions.
17 changes: 10 additions & 7 deletions src/ontology/mp-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -52956,7 +52956,6 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespac
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0003977> "MP:0003977")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0003977> "abnormal circulating carnitine level")
EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0003977> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_17126> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/MP_0003977> <http://purl.obolibrary.org/obo/MP_0005311>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0003977> <http://purl.obolibrary.org/obo/MP_0021132>)

# Class: <http://purl.obolibrary.org/obo/MP_0003978> (decreased circulating carnitine level)
Expand Down Expand Up @@ -68658,7 +68657,9 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespac
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0005469> "MP:0005469")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0005469> "abnormal thyroxine level")
EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0005469> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/CHEBI_30660>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005469> <http://purl.obolibrary.org/obo/MP_0005332>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005469> <http://purl.obolibrary.org/obo/MP_0005468>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005469> <http://purl.obolibrary.org/obo/MP_0021145>)

# Class: <http://purl.obolibrary.org/obo/MP_0005470> (increased thyroxine level)

Expand All @@ -68670,6 +68671,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://pu
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0005470> "increased thyroxine level")
EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0005470> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000470> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/CHEBI_30660>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005470> <http://purl.obolibrary.org/obo/MP_0005469>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005470> <http://purl.obolibrary.org/obo/MP_0014527>)

# Class: <http://purl.obolibrary.org/obo/MP_0005471> (decreased thyroxine level)

Expand All @@ -68685,6 +68687,7 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0005471> "decr
EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0005471> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001997> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/CHEBI_30660>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005471> <http://purl.obolibrary.org/obo/MP_0005469>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005471> <http://purl.obolibrary.org/obo/MP_0014455>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005471> <http://purl.obolibrary.org/obo/MP_0014528>)

# Class: <http://purl.obolibrary.org/obo/MP_0005472> (abnormal triiodothyronine level)

Expand Down Expand Up @@ -68729,6 +68732,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespac
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0005475> "MP:0005475")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0005475> "abnormal circulating thyroxine level")
EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0005475> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_30660> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005475> <http://purl.obolibrary.org/obo/MP_0005311>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005475> <http://purl.obolibrary.org/obo/MP_0005418>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005475> <http://purl.obolibrary.org/obo/MP_0005469>)

Expand Down Expand Up @@ -68760,6 +68764,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/MP_0005477> <http://purl.obolibrary.o
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005477> <http://purl.obolibrary.org/obo/MP_0005470>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005477> <http://purl.obolibrary.org/obo/MP_0005475>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005477> <http://purl.obolibrary.org/obo/MP_0014456>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005477> <http://purl.obolibrary.org/obo/MP_0014530>)

# Class: <http://purl.obolibrary.org/obo/MP_0005478> (decreased circulating thyroxine level)

Expand All @@ -68778,6 +68783,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/MP_0005478> <http://purl.obolibrary.o
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005478> <http://purl.obolibrary.org/obo/MP_0005471>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005478> <http://purl.obolibrary.org/obo/MP_0005475>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005478> <http://purl.obolibrary.org/obo/MP_0014457>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0005478> <http://purl.obolibrary.org/obo/MP_0014531>)

# Class: <http://purl.obolibrary.org/obo/MP_0005479> (decreased circulating triiodothyronine level)

Expand Down Expand Up @@ -136066,7 +136072,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespac
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0012603> "MP:0012603")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0012603> "abnormal glutathione level")
EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0012603> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/CHEBI_16856>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/MP_0012603> <http://purl.obolibrary.org/obo/MP_0005332>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0012603> <http://purl.obolibrary.org/obo/MP_0021145>)

# Class: <http://purl.obolibrary.org/obo/MP_0012604> (decreased glutathione level)

Expand All @@ -136082,7 +136088,6 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://pu
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0012604> "decreased glutathione level")
EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0012604> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001997> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/CHEBI_16856>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/MP_0012604> <http://purl.obolibrary.org/obo/MP_0012603>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0012604> <http://purl.obolibrary.org/obo/MP_0014528>)

# Class: <http://purl.obolibrary.org/obo/MP_0012605> (decreased kidney glutathione level)

Expand Down Expand Up @@ -136111,7 +136116,6 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://pu
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0012606> "increased glutathione level")
EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0012606> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000470> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/CHEBI_16856>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/MP_0012606> <http://purl.obolibrary.org/obo/MP_0012603>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0012606> <http://purl.obolibrary.org/obo/MP_0014527>)

# Class: <http://purl.obolibrary.org/obo/MP_0012607> (increased kidney glutathione level)

Expand Down Expand Up @@ -154634,7 +154638,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0014532> "MP:0014532")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0014532> "decreased circulating glutathione level")
EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0014532> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001997> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16856> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/MP_0014532> <http://purl.obolibrary.org/obo/MP_0014531>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0014532> <http://purl.obolibrary.org/obo/MP_0012604>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0014532> <http://purl.obolibrary.org/obo/MP_0030652>)

# Class: <http://purl.obolibrary.org/obo/MP_0014533> (decreased circulating homocitrulline level)
Expand Down Expand Up @@ -177317,7 +177321,6 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespac
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0030652> "MP:0030652")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0030652> "abnormal circulating glutathione level")
EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0030652> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16856> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/MP_0030652> <http://purl.obolibrary.org/obo/MP_0005311>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0030652> <http://purl.obolibrary.org/obo/MP_0012603>)

# Class: <http://purl.obolibrary.org/obo/MP_0030653> (increased circulating glutathione level)
Expand All @@ -177337,7 +177340,6 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://pu
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0030653> "increased circulating glutathione level")
EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0030653> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000470> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_16856> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/MP_0030653> <http://purl.obolibrary.org/obo/MP_0012606>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0030653> <http://purl.obolibrary.org/obo/MP_0014530>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0030653> <http://purl.obolibrary.org/obo/MP_0030652>)

# Class: <http://purl.obolibrary.org/obo/MP_0030654> (abnormal circulating glycine level)
Expand Down Expand Up @@ -177702,6 +177704,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://pu
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0030677> "abnormal hydroxyproline level")
EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0030677> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/CHEBI_24741>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/MP_0030677> <http://purl.obolibrary.org/obo/MP_0005332>)
SubClassOf(<http://purl.obolibrary.org/obo/MP_0030677> <http://purl.obolibrary.org/obo/MP_0021145>)

# Class: <http://purl.obolibrary.org/obo/MP_0030678> (increased hydroxyproline level)

Expand Down

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