Remove miaTime (#98)

* up

* up

* up

* up

vignettes/miaViz.Rmd

@@ -256,7 +256,7 @@ plotColGraph(altExp(GlobalPatterns,"Genus"),
 
 # Plotting of serial data
 
-```{r}
+```{r, eval=FALSE}
 # Load data from miaTime package
 library("miaTime")
 data(SilvermanAGutData, package="miaTime")
@@ -271,7 +271,7 @@ descriptor for ordering the data. The `y` argument selects the feature to show.
 Since plotting a lot of features is not advised a maximum of 20 features can 
 plotted at the same time.
 
-```{r}
+```{r, eval=FALSE}
 plotSeries(tse,
            x = "DAY_ORDER",
            y = taxa,
@@ -281,7 +281,7 @@ If replicated data is present, data is automatically used for calculation of the
 `mean` and `sd` and plotted as a range. Data from different assays can be used
 for plotting via the `assay.type`.
 
-```{r}
+```{r, eval=FALSE}
 plotSeries(tse[taxa,],
            x = "DAY_ORDER",
            colour_by = "Family",
@@ -291,7 +291,7 @@ plotSeries(tse[taxa,],
 
 Additional variables can be used to modify line type aesthetics.
 
-```{r}
+```{r, eval=FALSE}
 plotSeries(tse,
            x = "DAY_ORDER",
            y = getTopTaxa(tse, 5),