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microbiome · Jul 4, 2023 · 5ed8837 · 5ed8837
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diff --git a/R/plotDMN.R b/R/plotDMN.R
@@ -23,13 +23,18 @@
 #' @name plotDMN
 #'
 #' @examples
-#' data(dmn_se, package = "mia")
+#' library(mia)
+#' library(bluster)
 #' 
-#' # Put metadata in correct place
-#' metadata(dmn_se)$DMM$dmm <- metadata(dmn_se)$DMN
+#' # Get dataset
+#' data("peerj13075", package = "mia")
+#' tse <- peerj13075
 #' 
-#' # plot the fit
-#' plotDMNFit(dmn_se, name = "DMM", type = "laplace")
+#' # Cluster the samples
+#' tse <- cluster(tse, DmmParam(k = 1:4), name = "DMM", full = TRUE)
+#' 
+#' # Plot the fit
+#' plotDMNFit(tse, name = "DMM", type = "laplace")
 #' 
 NULL
 

diff --git a/man/plotDMN.Rd b/man/plotDMN.Rd