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@microbiomeDB

MicrobiomeDB

R packages for reproducing and extending the methods, analyses, and data visualizations available through MicrobiomeDB.org

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  1. MicrobiomeDB MicrobiomeDB Public

    An R package containing tools for analyzing and visualizing microbiome data

    R 3

  2. microbiomeComputations microbiomeComputations Public

    An R package for analyzing microbiome data

    R

  3. microbiomeData microbiomeData Public

    An R package containing all of the curated datasets from MicrobiomeDB.org

    R

  4. corGraph corGraph Public

    An R Shiny app to generate correlation matrices and visualize them as networks

    R 1

Repositories

Showing 10 of 16 repositories
  • biobakerymgx Public Forked from HoffLab/biobakerymgx

    Read-preprocessing, taxonomic classification, functional classification, strain analysis, and pangenome analysis using bioBakery tools

    microbiomeDB/biobakerymgx’s past year of commit activity
    Nextflow 0 MIT 7 0 0 Updated Oct 1, 2024
  • MicrobiomeDB Public

    An R package containing tools for analyzing and visualizing microbiome data

    microbiomeDB/MicrobiomeDB’s past year of commit activity
    R 3 Apache-2.0 0 15 1 Updated Sep 30, 2024
  • shotgun_metagenomics Public

    A collection of shotgun metagenomics data sets intended for use with the mbio-airflow-dags repository

    microbiomeDB/shotgun_metagenomics’s past year of commit activity
    HTML 0 0 1 0 Updated Sep 27, 2024
  • mbio_airflow_dags Public

    A collection of DAGs for running MicrobiomeDB data pipelines using Apache Airflow

    microbiomeDB/mbio_airflow_dags’s past year of commit activity
    Python 1 Apache-2.0 1 4 1 Updated Sep 27, 2024
  • veupathUtils Public
    microbiomeDB/veupathUtils’s past year of commit activity
    R 0 Apache-2.0 0 9 0 Updated Sep 20, 2024
  • mbio_paper_analysis Public
    microbiomeDB/mbio_paper_analysis’s past year of commit activity
    R 0 MIT 0 0 0 Updated Aug 30, 2024
  • amplicon_sequencing Public

    A collection of amplicon sequencing data sets intended for use with the mbio-airflow-dags repository

    microbiomeDB/amplicon_sequencing’s past year of commit activity
    HTML 0 0 1 0 Updated Jun 19, 2024
  • microbiomeData Public

    An R package containing all of the curated datasets from MicrobiomeDB.org

    microbiomeDB/microbiomeData’s past year of commit activity
    R 0 Apache-2.0 0 9 0 Updated Jun 10, 2024
  • microbiomeComputations Public

    An R package for analyzing microbiome data

    microbiomeDB/microbiomeComputations’s past year of commit activity
    R 0 Apache-2.0 0 16 0 Updated Jun 5, 2024
  • corGraph Public

    An R Shiny app to generate correlation matrices and visualize them as networks

    microbiomeDB/corGraph’s past year of commit activity
    R 0 Apache-2.0 1 17 0 Updated May 30, 2024
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