move requirements to folder

constraints/3.8.txt

@@ -151,4 +151,4 @@ typing_extensions==4.9.0
 tzdata==2023.4
 urllib3==2.1.0
 yarl==1.9.4
-zipp==3.17.0
+zipp==3.17.0

requirements.txt

@@ -2,31 +2,9 @@
 pydantic-settings
 typer[all]
 
-loguru
-black
-isort
-mypy
-ruff
-
-numpy
-pandas
 cython
-langchain
 scipy
-tiktoken
 python-Levenshtein
-scikit-learn
-
-# PDF related
-pypdf
-azure-core
-azure-ai-formrecognizer
-
-# factor implementations
-tables
-
-# azure identity related
-azure.identity
 
 # CI Fix Tool
 tree-sitter-python

requirements/package.txt

@@ -1,4 +1,5 @@
 # Requirements for package.
+loguru
 build
 setuptools-scm
 twine
@@ -7,11 +8,24 @@ fuzzywuzzy
 openai
 ruamel-yaml
 torch
+torch_geometric
 tabulate  # Convert pandas dataframe to markdown table to make it more readable to LLM
 tables  # we use hd5 as default data format. So we have to install pytables
+numpy # we use numpy as default data format. So we have to install numpy
+pandas # we use pandas as default data format. So we have to install pandas
 feedparser
 matplotlib
-pandas
+langchain
+tiktoken
+scikit-learn
+
+# azure identity related
+azure.identity
+
+# PDF related
+pypdf
+azure-core
+azure-ai-formrecognizer
 
 # TODO: dependencies for implementing factors.
 # I think it is for running insteading of implementing. The dependency should be in