Jose L. Mijangos1,2, Gilad Bino3, Tahneal Hawke3, Stephen H. Kolomyjec4, Richard T. Kingsford3, Harvinder Sidhu1, Tom Grant3, Jenna Day5, Kimberly N. Dias5, Jaime Gongora5 and William B. Sherwin6.
1 School of Science, UNSW, Canberra, Australia.
2 Centre for Conservation Ecology and Genomics, Institute for Applied Ecology, University of Canberra, Canberra, Australia.
3 Centre for Ecosystem Science, School of Biological, Earth and Environmental Sciences, UNSW, Sydney, Australia.
4 College of Science and the Environment, Lake Superior State University, Sault Sainte Marie, USA.
5 Sydney School of Veterinary Science, Faculty of Science, The University of Sydney, Sydney, Australia.
6 Evolution & Ecology Research Centre, UNSW, Sydney, Australia.
Corresponding author: Jose L. Mijangos. E-mail: [email protected]
Datasets and R scripts for "Fragmentation by major dams and implications for the future viability of platypus populations"
The below files contain all the information to replicate the analyses of the platypus manuscript.
- below_unreg.gen - Genepop format file containing the genotypes of the platypuses from Nepean River below the dam and the unregulated Wingecarribee River.
- above_unreg.gen - Genepop format file containing the genotypes of the platypuses from Nepean River above the dam and the unregulated Wingecarribee River.
- analyses_platy.R - R script containing all the analyses.
- below_above.gen - Genepop format file containing the genotypes of the platypuses from Nepean River below the dam and the unregulated Wingecarribee River.
- chrom_platypus.csv - Chromosome information of the platypus genome.
- fst_dams.csv - Dam's age and FST information.
- ID_Pop_Platypus.csv - Information of the platypuses for SNP data.
- ind_microsat.csv - Information of the platypuses fro microsatellite data.
- new_pop_assignments_dam.csv - Population assignment information for analyses by dam.
- new_pop_assignments_regions.csv - Population assignment information for analyses by region.
- new_pop_assignments.csv - Population assignment information for general analyses.
- platy_microsats.gen - Genepop format file containing the genotypes of the platypuses from Central New South Wales Rivers.
- Report_DPla19-4171_SNP_mapping_2.csv - DArT report containing the genotypes of the platypuses for SNP data.
- unreg_below_above.gen - Genepop format file containing the genotypes of the platypuses from the unregulated Wingecarribee River divided by below and above sections.