Merge pull request #198 from mila-iqia/update_deps

Update dependencies for security issues
mila-iqia · Sep 11, 2024 · f1421a5 · f1421a5
2 parents a621a26 + 7bf5e28
commit f1421a5
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diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -15,10 +15,10 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-    - name: Set up Python 3.9
+    - name: Set up Python 3.11
       uses: actions/setup-python@v2
       with:
-        python-version: 3.9
+        python-version: 3.11
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip

diff --git a/clockwork_dev.Dockerfile b/clockwork_dev.Dockerfile
@@ -1,4 +1,4 @@
-FROM python:3.9-slim-buster
+FROM python:3.11-slim-bookworm
 
 RUN mkdir /clockwork
 # Create folder required by Playwright to install browsers,

diff --git a/clockwork_tools_test/requirements.txt b/clockwork_tools_test/requirements.txt
@@ -1,3 +1,3 @@
 coverage==7.3.2
-pymongo==4.5.0
+pymongo==4.6.3
 pytest==7.4.2
diff --git a/clockwork_tools_test/requirements_orig.txt b/clockwork_tools_test/requirements_orig.txt
@@ -1,9 +1,9 @@
 coverage==7.3.2
-dnspython==2.4.2
+dnspython==2.6.1
 exceptiongroup==1.1.3
 iniconfig==2.0.0
 packaging==23.2
 pluggy==1.3.0
-pymongo==4.5.0
+pymongo==4.6.3
 pytest==7.4.2
-tomli==2.0.1
+tomli==2.0.1
diff --git a/clockwork_web/Dockerfile b/clockwork_web/Dockerfile
@@ -1,4 +1,4 @@
-FROM python:3.9-slim-buster
+FROM python:3.11-slim-bookworm
 
 RUN mkdir /clockwork
 

diff --git a/clockwork_web/requirements.txt b/clockwork_web/requirements.txt
@@ -3,19 +3,19 @@ blinker==1.7.0
 certifi==2024.7.4
 charset-normalizer==3.3.2
 click==8.1.7
-dnspython==2.4.2
+dnspython==2.6.1
 Flask==3.0.0
 flask-babel==4.0.0
 Flask-Login @ git+https://github.com/maxcountryman/flask-login.git@ea80968c10f3d521ea4983652f183aa42e2f44fc
-idna==3.4
+idna==3.8
 itsdangerous==2.1.2
-Jinja2==3.1.2
+Jinja2==3.1.4
 MarkupSafe==2.1.3
 oauthlib==3.2.2
-pymongo==4.5.0
+pymongo==4.6.3
 pytz==2023.3.post1
-requests==2.31.0
-sentry-sdk==1.32.0
+requests==2.32.3
+sentry-sdk==2.14.0
 toml==0.10.2
-urllib3==2.0.7
-Werkzeug==3.0.1
+urllib3==2.2.2
+Werkzeug==3.0.4
diff --git a/clockwork_web/requirements_orig.txt b/clockwork_web/requirements_orig.txt
@@ -2,8 +2,8 @@ Flask==3.0.0
 flask-babel==4.0.0
 Flask-Login @ git+https://github.com/maxcountryman/flask-login.git@2204b4eee7b215977ba5a1bf85e2061f7fa65e20
 oauthlib==3.2.2
-pymongo==4.5.0
-requests==2.31.0
-sentry-sdk==1.32.0
+pymongo==4.6.3
+requests==2.32.3
+sentry-sdk==2.14.0
 toml==0.10.2
-Werkzeug==3.0.1
+Werkzeug==3.0.4
diff --git a/clockwork_web_test/requirements.txt b/clockwork_web_test/requirements.txt
@@ -2,13 +2,13 @@ certifi==2024.7.4
 charset-normalizer==3.3.0
 coverage==7.3.2
 exceptiongroup==1.1.3
-idna==3.4
+idna==3.8
 iniconfig==2.0.0
 packaging==23.2
 pluggy==1.3.0
 pytest==7.4.2
-requests==2.31.0
+requests==2.32.3
 requests-mock==1.11.0
 six==1.16.0
 tomli==2.0.1
-urllib3==2.0.7
+urllib3==2.2.2
diff --git a/scripts/Dockerfile b/scripts/Dockerfile
@@ -1,4 +1,4 @@
-FROM python:3.9-slim-buster
+FROM python:3.11-slim-bookworm
 
 RUN mkdir /clockwork
 

diff --git a/scripts/requirements.txt b/scripts/requirements.txt
@@ -1,11 +1,11 @@
 blinker==1.7.0
 click==8.1.7
-dnspython==2.4.2
+dnspython==2.6.1
 Flask==3.0.0
 itsdangerous==2.1.2
-Jinja2==3.1.2
+Jinja2==3.1.4
 ldap3==2.9.1
 MarkupSafe==2.1.3
 pyasn1==0.5.0
-pymongo==4.5.0
-Werkzeug==3.0.1
+pymongo==4.6.3
+Werkzeug==3.0.4
diff --git a/scripts/requirements_orig.txt b/scripts/requirements_orig.txt
@@ -1,4 +1,4 @@
 Flask==3.0.0
 ldap3==2.9.1
-pymongo==4.5.0
-Werkzeug==3.0.1
+pymongo==4.6.3
+Werkzeug==3.0.4
diff --git a/scripts_test/Dockerfile b/scripts_test/Dockerfile
@@ -1,4 +1,4 @@
-FROM python:3.9-slim-buster
+FROM python:3.11-slim-bookworm
 
 RUN mkdir /clockwork
 

diff --git a/scripts_test/requirements.txt b/scripts_test/requirements.txt
@@ -1,11 +1,11 @@
 coverage==7.3.2
-dnspython==2.4.2
+dnspython==2.6.1
 exceptiongroup==1.1.3
 iniconfig==2.0.0
 numpy==1.26.0
 packaging==23.2
 pluggy==1.3.0
-pymongo==4.5.0
+pymongo==4.6.3
 pytest==7.4.2
 toml==0.10.2
-tomli==2.0.1
+tomli==2.0.1
diff --git a/scripts_test/requirements_orig.txt b/scripts_test/requirements_orig.txt
@@ -1,5 +1,5 @@
 coverage==7.3.2
 numpy==1.26.0
-pymongo==4.5.0
+pymongo==4.6.3
 pytest==7.4.2
-toml==0.10.2
+toml==0.10.2
diff --git a/slurm_state/requirements.txt b/slurm_state/requirements.txt
@@ -1,10 +1,10 @@
 bcrypt==4.0.1
 cffi==1.16.0
-cryptography==41.0.4
-dnspython==2.4.2
+cryptography>=43.0.1
+dnspython==2.6.1
 numpy==1.26.0
-paramiko==3.3.1
+paramiko==3.3.2
 pycparser==2.21
-pymongo==4.5.0
+pymongo==4.6.3
 PyNaCl==1.5.0
-toml==0.10.2
+toml==0.10.2
diff --git a/slurm_state/requirements_orig.txt b/slurm_state/requirements_orig.txt
@@ -1,4 +1,4 @@
 numpy==1.26.0
-paramiko==3.3.1
-pymongo==4.5.0
-toml==0.10.2
+paramiko==3.3.2
+pymongo==4.6.3
+toml==0.10.2
diff --git a/slurm_state_test/Dockerfile b/slurm_state_test/Dockerfile
@@ -1,4 +1,4 @@
-FROM python:3.9-slim-buster
+FROM python:3.11-slim-bookworm
 
 RUN mkdir /clockwork
 

diff --git a/slurm_state_test/requirements.txt b/slurm_state_test/requirements.txt
@@ -1,9 +1,9 @@
 coverage==7.3.2
-dnspython==2.4.2
+dnspython==2.6.1
 exceptiongroup==1.1.3
 iniconfig==2.0.0
 packaging==23.2
 pluggy==1.3.0
-pymongo==4.5.0
+pymongo==4.6.3
 pytest==7.4.2
-tomli==2.0.1
+tomli==2.0.1
diff --git a/slurm_state_test/requirements_orig.txt b/slurm_state_test/requirements_orig.txt
@@ -1,3 +1,3 @@
 coverage==7.3.2
-pymongo==4.5.0
-pytest==7.4.2
+pymongo==4.6.3
+pytest==7.4.2