Fix deployment with updated renv/rsconnect #269
Workflow file for this run
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| # Name of the workflow => usethis::use_github_actions_badge("CI-CD-renv") | |
| name: CI-CD-renv | |
| on: | |
| # Triggered on push and pull request events | |
| push: | |
| pull_request: | |
| # Allow manual runs from the Actions tab | |
| workflow_dispatch: | |
| # Monthly runs on the 1st day of the month at midnight | |
| # (specific for ShinyCICD maintenance) | |
| schedule: | |
| - cron: '0 0 1 * *' | |
| jobs: | |
| CI-CD: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| # We keep a matrix for convenience, but we would typically just run on one | |
| # single OS and R version, aligned with the target deployment environment | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| # Access token for GitHub | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| # Preserve package sources for informative references in case of errors | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| # No RStudio Package Manager to respect renv.lock | |
| use-public-rspm: false | |
| - name: Install system dependencies | |
| # This is not taken care of (yet) by r-lib/actions/setup-renv | |
| # We need the development version of remotes to support newer Ubuntu and | |
| # for querying system requirements for multiple pkgs (r-lib/remotes#665) | |
| # We could use pak-based installation for renv, which includes system | |
| # requirements, but would have to handle the pak cache explicitly | |
| # See https://github.com/r-lib/actions/issues/785 | |
| # Note: We deactivate renv explicitly (setup-renv below will reactivate) | |
| run: | | |
| Rscript -e "if (Sys.getenv('RENV_PROJECT') != '') renv::deactivate()" | |
| Rscript -e "install.packages(c('remotes', 'distro', 'jsonlite'))" | |
| Rscript -e "remotes::install_github('r-lib/remotes')" | |
| SYSTEM_REQUIREMENTS='with(distro::distro(), remotes::system_requirements(id, short_version, package = names(jsonlite::read_json("renv.lock")$Packages)))' | |
| while read -r cmd; do echo sudo $cmd && eval sudo $cmd | |
| done < <(Rscript -e "writeLines($SYSTEM_REQUIREMENTS)") | |
| - name: Activate renv and restore packages with cache | |
| uses: r-lib/actions/setup-renv@v2 | |
| - name: Install R CMD check | |
| run: install.packages("rcmdcheck") | |
| shell: Rscript {0} | |
| - name: Check package | |
| uses: r-lib/actions/check-r-package@v2 | |
| - name: Deploy to shinyapps.io | |
| # Continuous deployment only for pushes to the main / master branch | |
| if: startsWith(github.ref, 'refs/heads/') || (github.ref == 'refs/heads/main' || github.ref == 'refs/heads/master') | |
| env: | |
| SHINYAPPS_ACCOUNT: ${{ secrets.SHINYAPPS_ACCOUNT }} | |
| SHINYAPPS_TOKEN: ${{ secrets.SHINYAPPS_TOKEN }} | |
| SHINYAPPS_SECRET: ${{ secrets.SHINYAPPS_SECRET }} | |
| run: Rscript deploy/deploy-shinyapps.R |