WiP

.github/workflows/ci-cd-renv.yml

@@ -54,12 +54,17 @@ jobs:
       - name: Setup pak to install system dependencies
         uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          packages: jsonlite
+          packages: jsonlite, processx
           dependencies: NA
           cache-version: 'sysreqs-1' # ensure keys are not shared with the renv cache
 
       - name: Install system dependencies
-        run: pak::sysreqs_fix_installed(names(jsonlite::read_json("renv.lock")$Packages))
+        run: |
+          (sysreqs_cmds <- pak::pkg_sysreqs(names(jsonlite::read_json("renv.lock")$Packages), dependencies = FALSE))
+          # inspired by pkgdepends:::sysreqs_install
+          lapply(unlist(sysreqs_cmds[c("pre_install", "install_scripts", "post_install")]), function(cmd) {
+            processx::run("sudo", c("sh", "-c", cmd))
+          })
         shell: Rscript {0}
 
       - name: Activate renv and restore packages with cache