Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Create README.md #14

Open
wants to merge 1 commit into
base: master
Choose a base branch
from
Open
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
35 changes: 35 additions & 0 deletions definition-files/wgs/README.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,35 @@
Here is the list of installed WGS tools.

samtools version: 1.16.1

tabix & htslib version: 1.16-20-g3f67e7e

java openjdk version: 1.8.0_352

bwa version: 0.7.17-r1188

manta version: 1.6.0

strelka2 version: 2.9.10

sambamba version: 0.8.2 (sambamba-0.8.2-linux-amd64-static)

gatk version: 4.3.0.0

lumpy version: 0.2.13

svtyper version: 0.7.1

python version: 2.7.16

bcftools version: 1.16-29-g815fd54

delly version: 1.1.6 (delly_v1.1.6_linux_x86_64bit)

bedtools version: 2.30.0

sv2 version: 1.5.0

samblaster version: 0.1.26

fastp version: 0.23.2