Incorporate decapodes ACSet serialization (#600)

- First pass on extracting and serializing the Decapodes ACSet
representation.
   - Includes working example of Halfar dome PDE.
- Math Expression handles Gradient and Absolute value explicitly.
- Math Expression explicitly incorporates multiplication operations for
consecutive Mrows, and handles equals operators.
- Minor bug fixes and insertion of asserts.

---------

Co-authored-by: Deepsana Shahi <[email protected]>
Co-authored-by: ualiangzhang <[email protected]>
Co-authored-by: Justin <[email protected]> fe6a8c1

api/python/skema/img2mml/models/decoders/xfmer_decoder.html

@@ -365,7 +365,7 @@ <h3>Instance variables</h3>
 <h3>Methods</h3>
 <dl>
 <dt id="skema.img2mml.models.decoders.xfmer_decoder.Transformer_Decoder.create_pad_mask"><code class="name flex">
-<span>def <span class="ident">create_pad_mask</span></span>(<span>self, matrix: <built-in method tensor of type object at 0x7f6e1495b500>, pad_token: int) ‑> <built-in method tensor of type object at 0x7f6e1495b500></span>
+<span>def <span class="ident">create_pad_mask</span></span>(<span>self, matrix: <built-in method tensor of type object at 0x7f6d5ad5b500>, pad_token: int) ‑> <built-in method tensor of type object at 0x7f6d5ad5b500></span>
 </code></dt>
 <dd>
 <div class="desc"></div>

api/python/skema/img2mml/models/encoding/positional_encoding_for_xfmer.html

@@ -157,7 +157,7 @@ <h3>Class variables</h3>
 <h3>Methods</h3>
 <dl>
 <dt id="skema.img2mml.models.encoding.positional_encoding_for_xfmer.PositionalEncoding.forward"><code class="name flex">
-<span>def <span class="ident">forward</span></span>(<span>self, x: <built-in method tensor of type object at 0x7f6e1495b500>) ‑> <built-in method tensor of type object at 0x7f6e1495b500></span>
+<span>def <span class="ident">forward</span></span>(<span>self, x: <built-in method tensor of type object at 0x7f6d5ad5b500>) ‑> <built-in method tensor of type object at 0x7f6d5ad5b500></span>
 </code></dt>
 <dd>
 <div class="desc"><p>Defines the computation performed at every call.</p>

api/rust/actix_http/h1/enum.Message.html

@@ -4,11 +4,11 @@
 }</code></pre><details class="toggle top-doc" open><summary class="hideme"><span>Expand description</span></summary><div class="docblock"><p>Codec message</p>
 </div></details><h2 id="variants" class="variants small-section-header">Variants<a href="#variants" class="anchor">§</a></h2><div class="variants"><section id="variant.Item" class="variant"><a href="#variant.Item" class="anchor">§</a><h3 class="code-header">Item(T)</h3></section><div class="docblock"><p>HTTP message.</p>
 </div><section id="variant.Chunk" class="variant"><a href="#variant.Chunk" class="anchor">§</a><h3 class="code-header">Chunk(<a class="enum" href="https://doc.rust-lang.org/1.73.0/core/option/enum.Option.html" title="enum core::option::Option">Option</a>&lt;<a class="struct" href="../../bytes/bytes/struct.Bytes.html" title="struct bytes::bytes::Bytes">Bytes</a>&gt;)</h3></section><div class="docblock"><p>Payload chunk.</p>
-</div></div><h2 id="trait-implementations" class="small-section-header">Trait Implementations<a href="#trait-implementations" class="anchor">§</a></h2><div id="trait-implementations-list"><details class="toggle implementors-toggle" open><summary><section id="impl-Debug-for-Message%3CT%3E" class="impl"><a class="src rightside" href="../../src/actix_http/h1/mod.rs.html#31">source</a><a href="#impl-Debug-for-Message%3CT%3E" class="anchor">§</a><h3 class="code-header">impl&lt;T: <a class="trait" href="https://doc.rust-lang.org/1.73.0/core/fmt/trait.Debug.html" title="trait core::fmt::Debug">Debug</a>&gt; <a class="trait" href="https://doc.rust-lang.org/1.73.0/core/fmt/trait.Debug.html" title="trait core::fmt::Debug">Debug</a> for <a class="enum" href="enum.Message.html" title="enum actix_http::h1::Message">Message</a>&lt;T&gt;</h3></section></summary><div class="impl-items"><details class="toggle method-toggle" open><summary><section id="method.fmt" class="method trait-impl"><a class="src rightside" href="../../src/actix_http/h1/mod.rs.html#31">source</a><a href="#method.fmt" class="anchor">§</a><h4 class="code-header">fn <a href="https://doc.rust-lang.org/1.73.0/core/fmt/trait.Debug.html#tymethod.fmt" class="fn">fmt</a>(&amp;self, f: &amp;mut <a class="struct" href="https://doc.rust-lang.org/1.73.0/core/fmt/struct.Formatter.html" title="struct core::fmt::Formatter">Formatter</a>&lt;'_&gt;) -&gt; <a class="type" href="https://doc.rust-lang.org/1.73.0/core/fmt/type.Result.html" title="type core::fmt::Result">Result</a></h4></section></summary><div class='docblock'>Formats the value using the given formatter. <a href="https://doc.rust-lang.org/1.73.0/core/fmt/trait.Debug.html#tymethod.fmt">Read more</a></div></details></div></details><details class="toggle implementors-toggle" open><summary><section id="impl-Encoder%3CMessage%3C(RequestHeadType,+BodySize)%3E%3E-for-ClientCodec" class="impl"><a class="src rightside" href="../../src/actix_http/h1/client.rs.html#191-240">source</a><a href="#impl-Encoder%3CMessage%3C(RequestHeadType,+BodySize)%3E%3E-for-ClientCodec" class="anchor">§</a><h3 class="code-header">impl <a class="trait" href="../../tokio_util/codec/encoder/trait.Encoder.html" title="trait tokio_util::codec::encoder::Encoder">Encoder</a>&lt;<a class="enum" href="enum.Message.html" title="enum actix_http::h1::Message">Message</a>&lt;(<a class="enum" href="../enum.RequestHeadType.html" title="enum actix_http::RequestHeadType">RequestHeadType</a>, <a class="enum" href="../body/enum.BodySize.html" title="enum actix_http::body::BodySize">BodySize</a>)&gt;&gt; for <a class="struct" href="struct.ClientCodec.html" title="struct actix_http::h1::ClientCodec">ClientCodec</a></h3></section></summary><div class="impl-items"><details class="toggle" open><summary><section id="associatedtype.Error-1" class="associatedtype trait-impl"><a href="#associatedtype.Error-1" class="anchor">§</a><h4 class="code-header">type <a href="../../tokio_util/codec/encoder/trait.Encoder.html#associatedtype.Error" class="associatedtype">Error</a> = <a class="struct" href="https://doc.rust-lang.org/1.73.0/std/io/error/struct.Error.html" title="struct std::io::error::Error">Error</a></h4></section></summary><div class='docblock'>The type of encoding errors. <a href="../../tokio_util/codec/encoder/trait.Encoder.html#associatedtype.Error">Read more</a></div></details><details class="toggle method-toggle" open><summary><section id="method.encode-1" class="method trait-impl"><a class="src rightside" href="../../src/actix_http/h1/client.rs.html#194-239">source</a><a href="#method.encode-1" class="anchor">§</a><h4 class="code-header">fn <a href="../../tokio_util/codec/encoder/trait.Encoder.html#tymethod.encode" class="fn">encode</a>(
+</div></div><h2 id="trait-implementations" class="small-section-header">Trait Implementations<a href="#trait-implementations" class="anchor">§</a></h2><div id="trait-implementations-list"><details class="toggle implementors-toggle" open><summary><section id="impl-Debug-for-Message%3CT%3E" class="impl"><a class="src rightside" href="../../src/actix_http/h1/mod.rs.html#31">source</a><a href="#impl-Debug-for-Message%3CT%3E" class="anchor">§</a><h3 class="code-header">impl&lt;T: <a class="trait" href="https://doc.rust-lang.org/1.73.0/core/fmt/trait.Debug.html" title="trait core::fmt::Debug">Debug</a>&gt; <a class="trait" href="https://doc.rust-lang.org/1.73.0/core/fmt/trait.Debug.html" title="trait core::fmt::Debug">Debug</a> for <a class="enum" href="enum.Message.html" title="enum actix_http::h1::Message">Message</a>&lt;T&gt;</h3></section></summary><div class="impl-items"><details class="toggle method-toggle" open><summary><section id="method.fmt" class="method trait-impl"><a class="src rightside" href="../../src/actix_http/h1/mod.rs.html#31">source</a><a href="#method.fmt" class="anchor">§</a><h4 class="code-header">fn <a href="https://doc.rust-lang.org/1.73.0/core/fmt/trait.Debug.html#tymethod.fmt" class="fn">fmt</a>(&amp;self, f: &amp;mut <a class="struct" href="https://doc.rust-lang.org/1.73.0/core/fmt/struct.Formatter.html" title="struct core::fmt::Formatter">Formatter</a>&lt;'_&gt;) -&gt; <a class="type" href="https://doc.rust-lang.org/1.73.0/core/fmt/type.Result.html" title="type core::fmt::Result">Result</a></h4></section></summary><div class='docblock'>Formats the value using the given formatter. <a href="https://doc.rust-lang.org/1.73.0/core/fmt/trait.Debug.html#tymethod.fmt">Read more</a></div></details></div></details><details class="toggle implementors-toggle" open><summary><section id="impl-Encoder%3CMessage%3C(RequestHeadType,+BodySize)%3E%3E-for-ClientCodec" class="impl"><a class="src rightside" href="../../src/actix_http/h1/client.rs.html#191-240">source</a><a href="#impl-Encoder%3CMessage%3C(RequestHeadType,+BodySize)%3E%3E-for-ClientCodec" class="anchor">§</a><h3 class="code-header">impl <a class="trait" href="../../tokio_util/codec/encoder/trait.Encoder.html" title="trait tokio_util::codec::encoder::Encoder">Encoder</a>&lt;<a class="enum" href="enum.Message.html" title="enum actix_http::h1::Message">Message</a>&lt;(<a class="enum" href="../enum.RequestHeadType.html" title="enum actix_http::RequestHeadType">RequestHeadType</a>, <a class="enum" href="../body/enum.BodySize.html" title="enum actix_http::body::BodySize">BodySize</a>)&gt;&gt; for <a class="struct" href="struct.ClientCodec.html" title="struct actix_http::h1::ClientCodec">ClientCodec</a></h3></section></summary><div class="impl-items"><details class="toggle" open><summary><section id="associatedtype.Error" class="associatedtype trait-impl"><a href="#associatedtype.Error" class="anchor">§</a><h4 class="code-header">type <a href="../../tokio_util/codec/encoder/trait.Encoder.html#associatedtype.Error" class="associatedtype">Error</a> = <a class="struct" href="https://doc.rust-lang.org/1.73.0/std/io/error/struct.Error.html" title="struct std::io::error::Error">Error</a></h4></section></summary><div class='docblock'>The type of encoding errors. <a href="../../tokio_util/codec/encoder/trait.Encoder.html#associatedtype.Error">Read more</a></div></details><details class="toggle method-toggle" open><summary><section id="method.encode" class="method trait-impl"><a class="src rightside" href="../../src/actix_http/h1/client.rs.html#194-239">source</a><a href="#method.encode" class="anchor">§</a><h4 class="code-header">fn <a href="../../tokio_util/codec/encoder/trait.Encoder.html#tymethod.encode" class="fn">encode</a>(
     &amp;mut self,
     item: <a class="enum" href="enum.Message.html" title="enum actix_http::h1::Message">Message</a>&lt;(<a class="enum" href="../enum.RequestHeadType.html" title="enum actix_http::RequestHeadType">RequestHeadType</a>, <a class="enum" href="../body/enum.BodySize.html" title="enum actix_http::body::BodySize">BodySize</a>)&gt;,
     dst: &amp;mut <a class="struct" href="../../bytes/bytes_mut/struct.BytesMut.html" title="struct bytes::bytes_mut::BytesMut">BytesMut</a>
-) -&gt; <a class="enum" href="https://doc.rust-lang.org/1.73.0/core/result/enum.Result.html" title="enum core::result::Result">Result</a>&lt;<a class="primitive" href="https://doc.rust-lang.org/1.73.0/std/primitive.unit.html">()</a>, Self::<a class="associatedtype" href="../../tokio_util/codec/encoder/trait.Encoder.html#associatedtype.Error" title="type tokio_util::codec::encoder::Encoder::Error">Error</a>&gt;</h4></section></summary><div class='docblock'>Encodes a frame into the buffer provided. <a href="../../tokio_util/codec/encoder/trait.Encoder.html#tymethod.encode">Read more</a></div></details></div></details><details class="toggle implementors-toggle" open><summary><section id="impl-Encoder%3CMessage%3C(Response%3C()%3E,+BodySize)%3E%3E-for-Codec" class="impl"><a class="src rightside" href="../../src/actix_http/h1/codec.rs.html#149-197">source</a><a href="#impl-Encoder%3CMessage%3C(Response%3C()%3E,+BodySize)%3E%3E-for-Codec" class="anchor">§</a><h3 class="code-header">impl <a class="trait" href="../../tokio_util/codec/encoder/trait.Encoder.html" title="trait tokio_util::codec::encoder::Encoder">Encoder</a>&lt;<a class="enum" href="enum.Message.html" title="enum actix_http::h1::Message">Message</a>&lt;(<a class="struct" href="../struct.Response.html" title="struct actix_http::Response">Response</a>&lt;<a class="primitive" href="https://doc.rust-lang.org/1.73.0/std/primitive.unit.html">()</a>&gt;, <a class="enum" href="../body/enum.BodySize.html" title="enum actix_http::body::BodySize">BodySize</a>)&gt;&gt; for <a class="struct" href="struct.Codec.html" title="struct actix_http::h1::Codec">Codec</a></h3></section></summary><div class="impl-items"><details class="toggle" open><summary><section id="associatedtype.Error" class="associatedtype trait-impl"><a href="#associatedtype.Error" class="anchor">§</a><h4 class="code-header">type <a href="../../tokio_util/codec/encoder/trait.Encoder.html#associatedtype.Error" class="associatedtype">Error</a> = <a class="struct" href="https://doc.rust-lang.org/1.73.0/std/io/error/struct.Error.html" title="struct std::io::error::Error">Error</a></h4></section></summary><div class='docblock'>The type of encoding errors. <a href="../../tokio_util/codec/encoder/trait.Encoder.html#associatedtype.Error">Read more</a></div></details><details class="toggle method-toggle" open><summary><section id="method.encode" class="method trait-impl"><a class="src rightside" href="../../src/actix_http/h1/codec.rs.html#152-196">source</a><a href="#method.encode" class="anchor">§</a><h4 class="code-header">fn <a href="../../tokio_util/codec/encoder/trait.Encoder.html#tymethod.encode" class="fn">encode</a>(
+) -&gt; <a class="enum" href="https://doc.rust-lang.org/1.73.0/core/result/enum.Result.html" title="enum core::result::Result">Result</a>&lt;<a class="primitive" href="https://doc.rust-lang.org/1.73.0/std/primitive.unit.html">()</a>, Self::<a class="associatedtype" href="../../tokio_util/codec/encoder/trait.Encoder.html#associatedtype.Error" title="type tokio_util::codec::encoder::Encoder::Error">Error</a>&gt;</h4></section></summary><div class='docblock'>Encodes a frame into the buffer provided. <a href="../../tokio_util/codec/encoder/trait.Encoder.html#tymethod.encode">Read more</a></div></details></div></details><details class="toggle implementors-toggle" open><summary><section id="impl-Encoder%3CMessage%3C(Response%3C()%3E,+BodySize)%3E%3E-for-Codec" class="impl"><a class="src rightside" href="../../src/actix_http/h1/codec.rs.html#149-197">source</a><a href="#impl-Encoder%3CMessage%3C(Response%3C()%3E,+BodySize)%3E%3E-for-Codec" class="anchor">§</a><h3 class="code-header">impl <a class="trait" href="../../tokio_util/codec/encoder/trait.Encoder.html" title="trait tokio_util::codec::encoder::Encoder">Encoder</a>&lt;<a class="enum" href="enum.Message.html" title="enum actix_http::h1::Message">Message</a>&lt;(<a class="struct" href="../struct.Response.html" title="struct actix_http::Response">Response</a>&lt;<a class="primitive" href="https://doc.rust-lang.org/1.73.0/std/primitive.unit.html">()</a>&gt;, <a class="enum" href="../body/enum.BodySize.html" title="enum actix_http::body::BodySize">BodySize</a>)&gt;&gt; for <a class="struct" href="struct.Codec.html" title="struct actix_http::h1::Codec">Codec</a></h3></section></summary><div class="impl-items"><details class="toggle" open><summary><section id="associatedtype.Error-1" class="associatedtype trait-impl"><a href="#associatedtype.Error-1" class="anchor">§</a><h4 class="code-header">type <a href="../../tokio_util/codec/encoder/trait.Encoder.html#associatedtype.Error" class="associatedtype">Error</a> = <a class="struct" href="https://doc.rust-lang.org/1.73.0/std/io/error/struct.Error.html" title="struct std::io::error::Error">Error</a></h4></section></summary><div class='docblock'>The type of encoding errors. <a href="../../tokio_util/codec/encoder/trait.Encoder.html#associatedtype.Error">Read more</a></div></details><details class="toggle method-toggle" open><summary><section id="method.encode-1" class="method trait-impl"><a class="src rightside" href="../../src/actix_http/h1/codec.rs.html#152-196">source</a><a href="#method.encode-1" class="anchor">§</a><h4 class="code-header">fn <a href="../../tokio_util/codec/encoder/trait.Encoder.html#tymethod.encode" class="fn">encode</a>(
     &amp;mut self,
     item: <a class="enum" href="enum.Message.html" title="enum actix_http::h1::Message">Message</a>&lt;(<a class="struct" href="../struct.Response.html" title="struct actix_http::Response">Response</a>&lt;<a class="primitive" href="https://doc.rust-lang.org/1.73.0/std/primitive.unit.html">()</a>&gt;, <a class="enum" href="../body/enum.BodySize.html" title="enum actix_http::body::BodySize">BodySize</a>)&gt;,
     dst: &amp;mut <a class="struct" href="../../bytes/bytes_mut/struct.BytesMut.html" title="struct bytes::bytes_mut::BytesMut">BytesMut</a>