Fixed a doc mismatch and a scripts typo. #94
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WalkthroughThe recent modifications involve updating references from EFGPT to ESGPT within the data extraction and processing documentation for the MIMIC IV tutorial, indicating a shift to using the ESGPT repository for dataset pipeline configuration. Additionally, there is a renaming of a script in the setup process, specifically for launching a hyperparameter sweep with Weights & Biases, to better reflect its purpose in pretraining. Changes
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Actionable comments posted: 1
Actionable comments outside the diff hunks (1)
docs/MIMIC_IV_tutorial/data_extraction_processing.md (1)
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36-36: Replace "it's" with "its" to correct the possessive form.- it's value is set to the sentinel OmegaConf "MISSING" value, `???` + its value is set to the sentinel OmegaConf "MISSING" value, `???`This correction enhances the grammatical accuracy of the documentation.
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- docs/MIMIC_IV_tutorial/data_extraction_processing.md (2 hunks)
- setup.py (1 hunks)
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setup.py (1)
27-27: The script renaming aligns well with the PR objectives and clarifies its purpose.Ensure to update any references or documentation that might be pointing to the old script name.
docs/MIMIC_IV_tutorial/data_extraction_processing.md (1)
24-32: The update fromEFGPTtoESGPTin the documentation is clear and aligns with the PR objectives.Ensure all instances of the old reference throughout the project documentation have been updated accordingly.
| @@ -43,8 +43,8 @@ command: | |||
| #### Hydra-specific parameters | |||
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| The `defaults:` block at the top is a Hydra specific inclusion, and ensures the script knows to merge this | |||
| configuration file. Similarly, the `hydra.searchpath=[$EFGPT_PATH/confgis]` command line argument also ensures | |||
| Hydra knows to look for the base config in the EFGPT repository's configs path. | |||
| configuration file. Similarly, the `hydra.searchpath=[$ESGPT_PATH/confgis]` command line argument also ensures | |||
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Fix the typo in the hydra.searchpath configuration.
- hydra.searchpath=[$ESGPT_PATH/confgis]
+ hydra.searchpath=[$ESGPT_PATH/configs]This correction ensures accuracy and prevents potential confusion.
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| configuration file. Similarly, the `hydra.searchpath=[$ESGPT_PATH/confgis]` command line argument also ensures | |
| configuration file. Similarly, the `hydra.searchpath=[$ESGPT_PATH/configs]` command line argument also ensures |
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